RNA id: TCONS_00021993


Basic Information

Item Value
RNA id TCONS_00021993
length 605
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id XLOC_010109
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36579000 ~ 36613851 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGATCACAACAGTGCGCTTGCGTGATGAGATCCTGAATCCTGACTGAAGGAAGCCCGCGGAACAAAATGTCTGGGCAGCTCCCACACACCGTCTCAGGTTCCATTTGGTGAAATAATATCTGCTGCTCAAAGCCTGGTGTCGAGGCTCACCAACACCCTAAGATCACCAGAGAACACAAACCAACTAAGAGAGATTAGTTCAACACAGAGAGAGAGGACAACATCAAGTTTTCAGAGCCAGTCAGTTCAGCAAGAAATGAGGTCATTTCCTGGGTTTTTCCGAGAGGAGCGTAGAGGGAAAAGCTGTTTTGCACCATATAAGTGGAAATGTAAAAgcttattaatgtatttttacctGCTGGACAAACAGCATGAAAAAACACCAAAAGGAGAGGCAGAATTACATCTCACTATGGCTGGACTTGGAAGACAGCAGTTAAATGTGCAAGAAAATTTCCCCCATTCAGAGGTATGATTAAAGTTCCATGCCctgttattttgtatttctgtatttgttccaaaattataatgtattaattagggatgctcatttcggttaattttgctaaccgacaaccgtcgctcattaatcggttattaacggt

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021992 lncRNA upstream 2270 36606042 ~ 36608974 (+) True XLOC_010110
TCONS_00021989 lncRNA upstream 19903 36560692 ~ 36591341 (+) True XLOC_010108
TCONS_00021991 lncRNA upstream 26459 36579005 ~ 36584785 (+) False XLOC_010109
TCONS_00021987 lncRNA upstream 53364 36548027 ~ 36557880 (+) False XLOC_010107
TCONS_00021986 lncRNA upstream 53364 36548027 ~ 36557880 (+) False XLOC_010107
TCONS_00020073 lncRNA downstream 145279 36759130 ~ 36760076 (+) True XLOC_010112
TCONS_00021994 lncRNA downstream 154853 36768704 ~ 36789683 (+) False XLOC_010113
TCONS_00021995 lncRNA downstream 341237 36955088 ~ 36958828 (+) True XLOC_010114
TCONS_00020081 lncRNA downstream 969100 37582951 ~ 37603069 (+) True XLOC_010115
TCONS_00021996 lncRNA downstream 1019596 37633447 ~ 37641863 (+) True XLOC_010116
TCONS_00020067 mRNA upstream 447736 36126310 ~ 36163508 (+) False XLOC_010102
TCONS_00020066 mRNA upstream 447736 36126310 ~ 36163508 (+) True XLOC_010102
TCONS_00020064 mRNA upstream 673535 35918463 ~ 35937709 (+) False XLOC_010100
TCONS_00020065 mRNA upstream 677966 35924188 ~ 35933278 (+) True XLOC_010100
TCONS_00020062 mRNA upstream 677978 35916371 ~ 35933266 (+) False XLOC_010100
TCONS_00020069 mRNA downstream 37133 36650984 ~ 36703368 (+) False XLOC_010111
TCONS_00020070 mRNA downstream 57213 36671064 ~ 36719705 (+) True XLOC_010111
TCONS_00020071 mRNA downstream 134687 36748538 ~ 36760156 (+) False XLOC_010112
TCONS_00020075 mRNA downstream 154823 36768674 ~ 36931731 (+) False XLOC_010113
TCONS_00020074 mRNA downstream 154823 36768674 ~ 36931731 (+) False XLOC_010113
TCONS_00020068 other upstream 26459 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020056 other upstream 885112 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020045 other upstream 1205357 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020039 other upstream 1330456 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020038 other upstream 1886562 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020072 other downstream 134755 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020082 other downstream 1157632 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020086 other downstream 1407168 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020097 other downstream 1682150 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020102 other downstream 1736872 38350723 ~ 38352278 (+) False XLOC_010130

Expression Profile

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