RNA id: TCONS_00020070


Basic Information

Item Value
RNA id TCONS_00020070
length 8669
RNA type mRNA
GC content 0.47
exon number 39
gene id XLOC_010111
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36650984 ~ 36719705 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGCCAGGATGAAAATCCCCCATATGACATTGTATTCCTTGTGGATAGTTCCAGCAGCATCGGCACGCGGGACTTTCGCGAGGTAAAGACGTTCATGCACACGTTTGTGGACGGTTTGGAAATTGACACCAAAAAGGTACAAGTTGGCGTTGTTCAGTTCAGCACGGATCCCCACAAAGAGTTTCTGCTGGGGGAATATGCTAACAAAGCGGAGCTGTTTAGGAAAATAGACAACCTTCCATACCGAACCGGAGGCACGTATATGGGAAAAGCCATGAATTTCCTAAAGGACAATTACTTCACAAGTGCTGGTGGAAGCCGTGTCAGTGAAAAAGTGCCTCAGGTTGTAGTGGTGATCACAGATGGAGACTCAACCGATGATATAAAGGGACCAGCTGAAGATCTGCGAAAGAAGGGTATTATCATTTTTGCCATTGGTGTCGGTTCTACCAATATGACCGAGCTGAAGGCGATTGCCAGCACCCCGCCTGAGCGTTTTGTGGTTAATATTGACAACTACCAAGCATTGCAAGGACTGACGACCACTATGAAGGAGACAGTGTGTGTCTTAATGAGGGATCAGGGGAAAGCTCTGGCCCCGAAGTTTACTGATGTATTTGTGTTGGTGGACAGTACAGCTCAGGGGGAAACACAGCAAATAAGGGAACTTCTCAACCGACTGCTTGTGCAGCTCAATGTGGGTGACGGATCTAATAAGATTGCGCTGGCTCAGTTTGGTGAGAACGTCGTCAAAGAGTTCCTGTTTAAAGACTACCAAACAGCGCAGAAAGCCAGAGAGTTCATAAATCGGTTCGAGCCCAGGCTTAATGGAGAGCGAAAATTGGGAAAAGCCATAGATTATGTTCGCACAAATTTTCTGAACACAGTATCTGGCAGCAGGATCGCGAAAGGCTACAAGCAGTATCTGCTGGTGCTGAGAACTGGAGACTCTTACGACTCTACTGTGAGGGCCATACGAACAATGAAGAATGAGGACGTGTCCGTCATTGATATCAGACTGGAACCAAATTTACAATCCTTGTTCCCCTCACTACGTGCCTTCCAGATCGACCAAAATGTTATTGATGTGGCTGCTGACGTCACAAAAAGAATTCAGGAGAAAGAGGTTTTCAATGTTACAGGAGATTGCAGATCAGCCCAAGTGGCGGATATTGTGTTTATTGTGGACGAGTCAGGTAGTATCACCCGAAACAATTTTGAGCTGATCAAACGTTTTCTCCACCGTATTATCAGCGGCCTAGAGGTGAACTCTGACAGCGTGAGGGTGGGAATGGTGCTTTATAACGACAGACCCAGCGCCGAATTCTACCTGGACACGTTTGCTAACAAGAACGATATTATGAACTACATTAAAATCATTCCATACAGAGGTGGAGGAACAGCAACCGGTGCAGCCCTAAAGTTCGCCCAGAACAATCTGTTCACTCAGAAGAGGGGGAGCCGGAAAGCTCTGGGTGTTAAGCAGATTGCCATCGTCATGACTGATGGCGAGTCCGAGGATGATGTCACGACCACAGCTGCTGAACTGAGGCGCTCAGGAGTCACCGTGTATGCCCTCGGAGTGAAGAACGCTAGTGTGGAGGAGCTCAAAAAAATCGGATCCTACCCAGAACATGAGTTTGTGTTCAATGTGGGAAGCTTCCTGATGCTTTCATCTCTGGAGAAGAGCCTCAGAAAGAGTCTGTGTAAGGTGGTGGTCAACAGACGATTTGACAAGAACAACAGATTGCTCCTAAAACAAGGATGTGTGAACACAGAGGAAGCAGACATTTATTTCCTGTTGGACAACTCTGGCAGCACTCGCGCCGACTTTGAAGATGTGAAGAAATTTATCTTAGGCTCCCTTCAGTTATTCAACATTGGACCAAATCGAGTTCGTGTAGGAGTTGTAAAAGTCGACCGCAATCCCACTCTTCAATTCAGCCTGACAGAGCACAAAAACAGAGCTTCTTTTGAAGCAGCCGTGAGGGGAATCAGTCAGCCTGTTGGAGGCTCAGAGAAAGGCAAAGCACTAAAATATGTGGCCAGTCTCTTTAATCAGGCTAAAGCATCCCGTCCAGCTAAAGTGCAGGAGATTCTCATTGTCATTACTGATAAGACGTCTCAAGATGATGTGGGGGATCCAGCAGAAGAGCTGAGGATTCAAGGGGTTTCGGTTTATGCCATTGGAGTAAAGGATGCCAGCCAGGATGAGCTCTTGAAGATGACGGCTGATGAAACTAAGGATTTCTATGTGACCAACTACGATGCCCTGAATGTTCTCAAGCGAGAAATTGTCACAGATATTTGCTCTCAAGAGGCCTGCAAGAACAAAGTGGCAGATATCATGTTTTTGATTGATGGTTCTTCCAGCATTTATGGCCCAGACTTTACATCAATGAAGACGTTTATTACCAAAGTTGTAAATGGGACCATCATCGGAGAAGACAGTGTGCATGTTGGTGTTGTCCAGTTCAGCAATAACCCACAGGAGCAATTTCCCCTGAACAGGTACTTTGACCAAAATGAATTAGAAGAAGCAATCGACGGCATTGAACAGTTAACAGGAGACACATACACAGGGAAAGCACTCTCGTTTATTTCAAAGTATTTTGATGCATCTAATGGCGGTCGGCCAGACGTTCCACAGTTCCTGGTGGTTATTACAGATGGAGAAGCTCATGATGCTGTCGCCGTACCTGCAAAGGCCATCAGAGACAAGGGTGTCACCATCTTCTCCATAGGTGTGGCCAGTGTAAACACCACACAGCTATGGGAGATCAGTGGTACTCAAGATAAAGTGTATGTGCAGAGGGATTTCGATGCGCTTCATTCCATCGACAAAAACCTACAATTCAAGCTCTGCAGCTCTCACCCTGGCGGTTGTCCTAGCACACAGTTGGCGGATGTGATCTTCCTAGTGCAGTGCACCAGACAAATTCGTCTCCAAGATTTTGAGaaaattaaaagctttttaaTTTCTGTGGTGAATAGCACACAAATTGGGGATAACCTAATTCGCTTTGGAGTTATCGTCTACTCTGACACGCCGAGTCAATTCTCCTTAAATCAGTACAACACTAGACGTCAAATAGCGGAAGCCATAACAAGCCTGAAGTCTCCAGCTGTAAGCGGATACACGGCTAGGGCTCTTGCATACTCTCTAACTTACTTCACTGAAGCCAACGGAGGACGCCAAAAACGAGGAGTCCCTCAAATGCTGTTCATGATCACAGATGGTGATGCCAGAGACCGAGAAAACCTGCGTGCAAGGGCTGATGAGTTTGCagccaaacaaataaatgtgtATGGAATTGGAGTGGCTAGAGCTCAGGATAGTGAGCTGGAGATTATTACCAAGAGCAAAAACAAAATCTTTCATGTTAATAATTACGACAACCTTCAAGATCTGCAGATGAATGTCTCAGGTGTGCTCTGCAATGCAACCAAACCAGTATGCCAGAACGAGGTGGCCGATCTTGTGTTTTTGATTGATGGATCTGAAAGCATCTCAGAGGAGTCGTGGATTACAGTGATTGCTTTCTTGCTAAATGTTGTGGACAAGCTTCGTATCGGTCCAGAACTTTTCAGAGTCGGCATAGCCCAGTTCAGCAGCGTATATCAGAAAGAGTTCTACATGAATGAGTACAAAGATGCTGATGGGGTGAAATCAGCAATTCGACGAATCACGCAAATTAAAGAAGGGACGCTTATTGGGAAAGCTCTAAGTAACGTTGTGGAATTCTTCCAGGAAGACAAAGGGAGTCGCAAACAGAGTGGCGTACCGCAGAATCTTGTTCTCATCACTGATGGCGTTTCATCGGACAGAGTGAACGAAGCAGCTGATCAACTCAGAAACCTTGGGATTAACGTCTTTGCGATTGGAATTGGAGCTGTCTCATTGCAGCAGCTCAGCTATATTGCCGGCTCACCGGACAGGTTGTTCAAAGTACAGAACTTCAACTACCTTAATCTGACAACAGCTACGTTTGTTGATGCCCTTTGCGTTCCTTTACCTTTAGCACAAGCAAGTTGTACTATTGACATTGGCATTGGATTTGATAACTCCCGAACCAGTTCAAGTTCTCGCTCAATCTTTAGAGACCAGATGAAGCTGCAGACGTACCTGCCCGAGATCATCCGCTCCATTTCAGAAGTTCACAACCTGTGCTGTATTACTAAACCAACCATCAAAACCAACATAGGCTTCAGATTGGTCGATGCTACAGGAAAAAGGCTGGATGATTTTTCTTTTGAAGAGTATGATGTAGGAGTGTTAAACAAAGTGATGGCACTTCAGACATCCCAGTCTCTGAAATTCAACAACCTGCTTCTGCGCTCTTTTGAAGAGAAGTTTAGAGCTTCGAATTCTTTTGTAAAGgTGCTGATCATCTTTACAGATGGGTTGGATGAGCCTGTTGAGAACCTTTTGTCTACTGTCAATAGCCTTAGGACAAATGGTGTAAAAGCTTTGTTGACAGTAGCGCTGGATGGATATAAAAGTACAACTGACCTGCAGAGGCTGGAGTTTGGTCGAGGGTTGCGCTATAAGCAGCTGCTCTCCATTGGCATGCAAAGTGTGGCCAGTGTCATGCAGAAGGAGATTGATAACATTGCATCGAGGGAGTGCTGTAATGTGGCGTGTAAGTGCTCTGGTCATGAGGGATCTCGTGGTTTTCAGGGACTGCCCGGGTCAAAGGGATTACCAGGACGGAGGGGAAATTCTGGCTACCCTGGAGAAGAAGGAGGACATGGTGAGCGAGGGCTTCCTGGTTTGAATGGAACTCGAGGTAATCAGGGATGCCCTGGAAGAAGAGGCTTAAAGggtGGCAGAGGTTACAGAGGTGAAAACGGAGAAGAGGGAGATAATGGATTAGATGGGGTTGATGGTGAACAGGGTAAAACTGGAGCACCGGGAAGTCCAGGAGAGCGAGGAGATCCAGGCAATCCGGGTCCAACAGGTATTTCAGGAAGCTCAGGAAGCCCAGGACAACGAGGCCTGAGAGGAGATCCGGGTAATTCAGGATTGGATAACAATGCCCGCGGTCGTAAAGGTGATGCCGGCAGTGCAGGCATGCAGGGTGATCCAGGCCCAGATGGTCTTGCTGGCCAAAGTGGAGAAAATGGCAGACCAGGTCAATCTGGCAGAAGAGGGACGGCAGGTCTACCGGGTCCCAGAGGGCCTCCAGGAGATCCAGGTTTACAAGGACTTCCAGGGGGCTCGGGTCCACagGGCCCTTTTGGTCCTCCTGGTCCAGTTGGGCAAAGAGGTTTTGTTGGTCTGCCTGGACCTCAGGGATCGCCTGGCTCTCCAGGGAGGCCAGGAACTAAAGGAAGCCTTGGATCCAGAGGACAGAAGGGTCAACCAGGTGATCCTGGAGAAAAGGGGTCTTTAGGGTCTGCAGGTTCCAGGGGACTGCCGGGAAAAGATGGCAATGATGGCTATGGATATCCAGGACTCAAAGGACAGAAGGGGGATTCTGGTTTTCCAGGATATCCTGGACTTCAGGGTGAATTGGGCTTTAAAGGCACAAACGGAGGTGTTGGTCCTAAAGGCAGCAGAGGAAGAGGGGGCAATGCTGGTAGGACGGGACCACCAGGAGATCCTGGCAGTGGGGGGATGACTGGACACAGAgGCCCGAAAGGACCACGAGGAGCCAGACAGATGTCTgaCTGTCAGCTGATCTCATATGTTCGAGACAACTGTATGTGCTGCAAAGACAACATAAAATGTCCGGCATACCCCACTGATCTTGTGATTGGCATGGACATGTCTGAAGATGTGACCCCTCAAGGCTTTGAGCGCATGCGTTCTGTGGTCCTCAGACTGCTGGACAACATGAAAATTGCAGAGAGTAGCTGCCCGACAGGGGCTCGAGTGGCTCTGGTGTCCTACAGCTCATTCACCAAATACCTGATCCGCTTTAACGACTACCACCGCAAGAAGCAGCTTATCGATGCCGTCAACAACATCGCCCTGGAACGCACTTCAAATCGCCGCAACATTGGCGCTGCCATGCGGTTTGTGGGCAGAAATGTTCTGAAGCGAGTGCGAAAAGGCATCCTGATGAGGAAGGTTGCCATTTTCCTCACTGCTGGAGAATCTCAAGATTCGATATCTCTCACCACTGCCATTCTAGAGTACAAAGCCCTGAATATTAAACTTGGGGTCATTGCTCTGAGGAATGTCCCTGCTATCAGGAGAGCTTTTGAGGCAGATGAGAGCCAGAGTTTTATCCTGACTGTTCTGGGTAGAGTGCAAGACCAGAATGCTACTCTTAGTAAGATCCAGAGTTGTGTTATTTGCTatgATCCCTGCAGACCAGCTAGAGAATGTGAGGGCACCAACCTGCCATCTGCACCTCAGGAGCTGGACATGGACTTTGTGATGGTTGTGGACGGGTCCCGTAGCATCCTGGCTGACGAGTTCAAGGGTGTCAAGGAGGTGCTCGGCGGTGTGCTCGATCAAATTGTTGTGAGCAGTCAACCCACCAGGGCTGACAGACAGGCCAGAGTGGCTCTCTACCAGCAGACGTCTACCTATAGTGACCCCCAGCCTGCACACGAGATATTCAGCTTACGTGAGTTCTCTGATCGCAATCTAATGAAGACAAGCATCATCCAAAAACTAAAGCAAACCGGAGGATCTCATGAACTGGGTTCTACTTTGGAGTTTGCTTTCAAGAAGTGTTTCAACGCAGTTCCAGAAAGTCGCAAGAACAAGATGCTGCTGGCCATCATTGGGGAGGAGACAGCGTTACAGGAGAAAAAACGTCTGGACTCTTTCTCCAGGTTGGCGAAGTGTAGCGGCATTGTTCTTTTCACCTTGACAGTGGGAGACTCCATCGCCTCTAGTCAGGTGGAGGAGCTTGCCAGCTATCCTTTAGAACAGCACATCATTCACCTGGGCCACTTGAAACATGGAGAACAGGAGTACACACAACGCTTCATGAGGACTTTCTTCCATATACTGAGCAAGAATATGAACACCTACCCTCATCCATCACTCCAGAGTCAGTGCAGGAATTTTCAAGAAAGTCCAGGCCAGCGTTTGGACTTTGAAGCTGCAGAGAGACCAGTGTACAGGGTTCCTGTGCTCTCCACTGTATATCCAGATGTTCAAGTAGAAGAGGACATGGAGGAAGAAGATACTGCGCCAGAGACTGAGGACCAGCAGTCTTCAGGTCGTGGAGACTCAATAATCCAATCTCCTGCTGACAATACAGACAGTCTGTGTCGCCAGAGTTCTGACCGTGGCACCGTCTGTGGTGATTATATGCAACGCTGGTATTACAATCCAGCAGTCCGTGGTTGTTTACCCTTCTGGTACGGCGGCTGTGGTGGTAATGGTAACCGTTTTAGTTCAGAGAGGGAGTGCCTTCAGACCTGTGGTAAAAAAAATCCTGAAGTAATCCCACAGACACAAGTTGAAACGGCTTTATTTAATGATGCCTGCCTCATGAAACAGGATGTGGGGCCCTGCAGTAATTATGTTTTAAGCTGGTATTATGACATCCAGCAGAATGAATGCTCTCAGTTCTGGTTTGGAGGATGTGAAGGAAACAAAAACAGGTTTGAAACGCGGGCGGAGTGTGAGGCCCTTTGTCTAAAGGACATTCAACctgtataaaacattttgaaCAGACTTTCTTCACCTTTTGAATTTAGCAATTATTTTCTTGAAGCCTGAAAATTGTACTTGTGCAGGTCTGTCTACAGCAACAAAAGAAATCCATACACAAACAGGAAATATTTATCGTTTTGCTTTGTTCACGGCAATTATGAAGTTAAGCATTGTGTCTAGACATTATAAGTGTGTAGAATAATCTctgtaatactttacaataaggtcatatttgttaacattaatgtgtCAGTTACTGAGAAACTAACAGTAAATGTTTTATAACATTAATCTTTATTATTGTTAGTGGATAAATCAATAGATTATTgataatgtgcattaaaacagTGATGCCCAATCTTTTATCACCGTGGactggtcaacgcttgacagtTTTACCTAGGCGTGGGTGGTGGGTATATGTAgattgctaggcgaccatcaaccattttttcataggatgacaagctgacaaaacattgcagCACTTCTGatgaaagttttattttatagagaaattaaatgattaaaaaaaacacactgaagctgattggtcagttctcgTCATGTGACTTGTGGTGTGCTTGCAGCATTCTGATGATGTTCAACTGGGTTAGGGCAAAGaacatagaatcaccaagagaaAACACTCTagtacaatttgggaaacagccactagagggcgcggcggccattttggaatgaaaactctaatagaacaacagcatattataagtctgtaaaataaactattaaaagtgctgatgattgtggtagtaagtgttgtattgtaataaataaaaaacaaagcagctgcttgccatcgcgatagcaataagatccaatggaaaGCCGactgctttcactccaaaatggcggaatccggggctgttgctgggcgctgctgttgcaattgAAAGTTCTATTGGGcatcgcctcttggtcattccaAGCTCTTTGGTTAGGGTTAGGTCCAGCCGCTTGCACGTGTCGCTCAATATATGGGTGCACAAGCcatgcacctccattggaaatataGAATTT

Function

GO:

id name namespace
GO:0007517 muscle organ development biological_process
GO:0007409 axonogenesis biological_process
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041111-303 Predicted to enable serine-type endopeptidase inhibitor activity. Acts upstream of or within axonogenesis and muscle organ development. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Is expressed in several structures, including anterior segment eye; musculature system; neural tube; spinal cord; and ventral mesenchyme.

Ensembl:

ensembl_id ENSDART00000109703

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021990 lncRNA upstream 57213 36579000 ~ 36613851 (+) False XLOC_010109
TCONS_00021993 lncRNA upstream 57213 36611244 ~ 36613851 (+) True XLOC_010109
TCONS_00021992 lncRNA upstream 62090 36606042 ~ 36608974 (+) True XLOC_010110
TCONS_00021989 lncRNA upstream 79723 36560692 ~ 36591341 (+) True XLOC_010108
TCONS_00020073 lncRNA downstream 39425 36759130 ~ 36760076 (+) True XLOC_010112
TCONS_00021994 lncRNA downstream 48999 36768704 ~ 36789683 (+) False XLOC_010113
TCONS_00021995 lncRNA downstream 235383 36955088 ~ 36958828 (+) True XLOC_010114
TCONS_00020081 lncRNA downstream 863246 37582951 ~ 37603069 (+) True XLOC_010115
TCONS_00021996 lncRNA downstream 913742 37633447 ~ 37641863 (+) True XLOC_010116
TCONS_00020067 mRNA upstream 507556 36126310 ~ 36163508 (+) False XLOC_010102
TCONS_00020066 mRNA upstream 507556 36126310 ~ 36163508 (+) True XLOC_010102
TCONS_00020064 mRNA upstream 733355 35918463 ~ 35937709 (+) False XLOC_010100
TCONS_00020065 mRNA upstream 737786 35924188 ~ 35933278 (+) True XLOC_010100
TCONS_00020062 mRNA upstream 737798 35916371 ~ 35933266 (+) False XLOC_010100
TCONS_00020071 mRNA downstream 28833 36748538 ~ 36760156 (+) False XLOC_010112
TCONS_00020075 mRNA downstream 48969 36768674 ~ 36931731 (+) False XLOC_010113
TCONS_00020074 mRNA downstream 48969 36768674 ~ 36931731 (+) False XLOC_010113
TCONS_00020076 mRNA downstream 186988 36906693 ~ 36931828 (+) True XLOC_010113
TCONS_00020079 mRNA downstream 751012 37470717 ~ 37630250 (+) False XLOC_010115
TCONS_00020068 other upstream 86279 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020056 other upstream 944932 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020045 other upstream 1265177 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020039 other upstream 1390276 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020038 other upstream 1946382 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020072 other downstream 28901 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020082 other downstream 1051778 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020086 other downstream 1301314 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020097 other downstream 1576296 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020102 other downstream 1631018 38350723 ~ 38352278 (+) False XLOC_010130

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_02589744_02622875.mRNA True 7457 mRNA 0.46 32 CI01000016 2589475 ~ 2622875 (-)