Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00001580 |
| length | 841 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 3 |
| gene id | XLOC_000997 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 8415983 ~ 8428761 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0008150 | biological_process | biological_process |
| GO:0030672 | synaptic vesicle membrane | cellular_component |
| GO:0031594 | neuromuscular junction | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0003674 | molecular_function | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070822-6 | Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuromuscular junction and synaptic vesicle membrane. Orthologous to human SYNGR3 (synaptogyrin 3). |
| ensembl_id | ENSDART00000138435 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003331 | lncRNA | downstream | 216864 | 8202390 ~ 8205228 (-) | True | XLOC_000996 |
| TCONS_00002916 | lncRNA | downstream | 501398 | 7919319 ~ 7920694 (-) | False | XLOC_000984 |
| TCONS_00002915 | lncRNA | downstream | 501454 | 7918938 ~ 7920638 (-) | False | XLOC_000984 |
| TCONS_00002914 | lncRNA | downstream | 501464 | 7918396 ~ 7920628 (-) | False | XLOC_000984 |
| TCONS_00002908 | lncRNA | downstream | 502940 | 7917875 ~ 7919152 (-) | False | XLOC_000984 |
| TCONS_00003332 | lncRNA | upstream | 76241 | 8504977 ~ 8507689 (-) | False | XLOC_000998 |
| TCONS_00001581 | lncRNA | upstream | 77686 | 8506422 ~ 8510066 (-) | True | XLOC_000998 |
| TCONS_00001583 | lncRNA | upstream | 114416 | 8543152 ~ 8543611 (-) | False | XLOC_000999 |
| TCONS_00001584 | lncRNA | upstream | 114951 | 8543687 ~ 8545359 (-) | False | XLOC_000999 |
| TCONS_00001586 | lncRNA | upstream | 121281 | 8550017 ~ 8553298 (-) | False | XLOC_000999 |
| TCONS_00001578 | mRNA | downstream | 229674 | 8165340 ~ 8192418 (-) | True | XLOC_000995 |
| TCONS_00001577 | mRNA | downstream | 280957 | 8134944 ~ 8141135 (-) | True | XLOC_000994 |
| TCONS_00001576 | mRNA | downstream | 281329 | 8127675 ~ 8140763 (-) | False | XLOC_000994 |
| TCONS_00001575 | mRNA | downstream | 320597 | 8022320 ~ 8101495 (-) | True | XLOC_000993 |
| TCONS_00001574 | mRNA | downstream | 401503 | 8017069 ~ 8020589 (-) | True | XLOC_000992 |
| TCONS_00001582 | mRNA | upstream | 110935 | 8539671 ~ 8553295 (-) | False | XLOC_000999 |
| TCONS_00001585 | mRNA | upstream | 121113 | 8549849 ~ 8553165 (-) | False | XLOC_000999 |
| TCONS_00001588 | mRNA | upstream | 126587 | 8555323 ~ 8566567 (-) | True | XLOC_001000 |
| TCONS_00001591 | mRNA | upstream | 209426 | 8638162 ~ 8646941 (-) | True | XLOC_001003 |
| TCONS_00001592 | mRNA | upstream | 220363 | 8649099 ~ 8652732 (-) | False | XLOC_001004 |
| TCONS_00001570 | other | downstream | 446323 | 7970406 ~ 7975769 (-) | True | XLOC_000989 |
| TCONS_00001564 | other | downstream | 501886 | 7920119 ~ 7920206 (-) | True | XLOC_000985 |
| TCONS_00001563 | other | downstream | 502525 | 7919480 ~ 7919567 (-) | True | XLOC_000984 |
| TCONS_00001562 | other | downstream | 503210 | 7918795 ~ 7918882 (-) | False | XLOC_000984 |
| TCONS_00001556 | other | downstream | 620446 | 7801531 ~ 7801646 (-) | True | XLOC_000982 |
| TCONS_00001587 | other | upstream | 124014 | 8552750 ~ 8553298 (-) | True | XLOC_000999 |
| TCONS_00001595 | other | upstream | 221373 | 8650109 ~ 8652655 (-) | False | XLOC_001004 |
| TCONS_00001610 | other | upstream | 689364 | 9118100 ~ 9118671 (-) | False | XLOC_001012 |
| TCONS_00001617 | other | upstream | 769123 | 9197859 ~ 9197966 (-) | True | XLOC_001018 |
| TCONS_00001629 | other | upstream | 1031274 | 9460010 ~ 9486080 (-) | False | XLOC_001025 |
