RNA id: TCONS_00020072


Basic Information

Item Value
RNA id TCONS_00020072
length 446
RNA type processed_transcript
GC content 0.38
exon number 3
gene id XLOC_010112
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36748538 ~ 36760156 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctttctttctttaacaaGATTATTTTTTGCATTTGGATGTTATGGCGTTGCACAAAGGATTAACCATGCTGAAGAGAGTTTTCACTCCAAACAAATGTTGCACACGAgaaatgtcaatgtttttttttatttattttatttatttttaaaaaactttttataatgttttagcaTGCATTGCAAAcaagcatattttaaaataaatatgcaatataAGGTCAATTCTGTGTACGCAGCAAGCGAGTGAAGTCAGTAGGGGTTATAGTAGCTGTTCGGAAATGGGACCAACACGTTGTACCAGAGCGGTCCCCCCCACGCCAAATTCTTTCCTGTGTGTGACGGTGTTATGCTTCTCCCAGGAACTTTCAAAAACAAAGTGGCCTTCATCACTGGAGGAGGAACTGGTCTCGGAAAAGCCATGACCACTACTTTATCTTCACTTGGAG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-142 Orthologous to human DECR1 (2,4-dienoyl-CoA reductase 1).

Ensembl:

ensembl_id ENSDART00000134441

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021990 lncRNA upstream 134755 36579000 ~ 36613851 (+) False XLOC_010109
TCONS_00021993 lncRNA upstream 134755 36611244 ~ 36613851 (+) True XLOC_010109
TCONS_00021992 lncRNA upstream 139632 36606042 ~ 36608974 (+) True XLOC_010110
TCONS_00021989 lncRNA upstream 157265 36560692 ~ 36591341 (+) True XLOC_010108
TCONS_00021991 lncRNA upstream 163821 36579005 ~ 36584785 (+) False XLOC_010109
TCONS_00020073 lncRNA downstream 9806 36759130 ~ 36760076 (+) True XLOC_010112
TCONS_00021994 lncRNA downstream 19380 36768704 ~ 36789683 (+) False XLOC_010113
TCONS_00021995 lncRNA downstream 205764 36955088 ~ 36958828 (+) True XLOC_010114
TCONS_00020081 lncRNA downstream 833627 37582951 ~ 37603069 (+) True XLOC_010115
TCONS_00021996 lncRNA downstream 884123 37633447 ~ 37641863 (+) True XLOC_010116
TCONS_00020070 mRNA upstream 28901 36671064 ~ 36719705 (+) True XLOC_010111
TCONS_00020069 mRNA upstream 45238 36650984 ~ 36703368 (+) False XLOC_010111
TCONS_00020067 mRNA upstream 585098 36126310 ~ 36163508 (+) False XLOC_010102
TCONS_00020066 mRNA upstream 585098 36126310 ~ 36163508 (+) True XLOC_010102
TCONS_00020064 mRNA upstream 810897 35918463 ~ 35937709 (+) False XLOC_010100
TCONS_00020075 mRNA downstream 19350 36768674 ~ 36931731 (+) False XLOC_010113
TCONS_00020074 mRNA downstream 19350 36768674 ~ 36931731 (+) False XLOC_010113
TCONS_00020076 mRNA downstream 157369 36906693 ~ 36931828 (+) True XLOC_010113
TCONS_00020079 mRNA downstream 721393 37470717 ~ 37630250 (+) False XLOC_010115
TCONS_00020078 mRNA downstream 721393 37470717 ~ 37630250 (+) False XLOC_010115
TCONS_00020068 other upstream 163821 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020056 other upstream 1022474 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020045 other upstream 1342719 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020039 other upstream 1467818 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020038 other upstream 2023924 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020082 other downstream 1022159 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020086 other downstream 1271695 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020097 other downstream 1546677 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020102 other downstream 1601399 38350723 ~ 38352278 (+) False XLOC_010130
TCONS_00020107 other downstream 1645089 38394413 ~ 38396795 (+) True XLOC_010132

Expression Profile

//