RNA id: TCONS_00020075


Basic Information

Item Value
RNA id TCONS_00020075
length 3327
RNA type mRNA
GC content 0.50
exon number 21
gene id XLOC_010113
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36768674 ~ 36931828 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCCCTCCCCCAGTCTCACCTGCAGTCAACAGCTGCTGCTAATCAAGGCTCACAGTTGTGACAGAACAAACGACGTTCTATGCAAAACAAAACTATACTTCTAAATTGTTTTGCTAAACACCACCTGCAACAGAAGAAAAACTACACTTCACGGTGTCTTGCAGAAGTCTTTGTTTTAAATTTTCTTCTCAACTTTGGTATCCACAAGACATGGATCGGTGCCATTACAACCCAAAGGAGGAGCTTCCGAGCAGGGTTTGAAGAAGTAATGTCTGTTAGAAACCATCGCTGTGAAAAGGCGGCAGTGGCATCATGAACTTCTTACCAGTTCTTTCACTTTTGATACTCTTATGTATCAGAGTATCAGGACAGTGCTGGCAGGCCGCAACCTACTCTGAAAGCGTGGTGTCTCCGGAGCTGAGGAGCAGCAGTATTTTACGTGTCCCGGATGTGTCGTCCCTGGCTCAGTGTGCCGGGGCCTGCTGTGATCTCCCGGGCTGTGACCTGGCCTGGTTTTTTGAGCACCGATGCTATGTGCTCAGTTGTCAGCACACAGAAAACTGCCAGCCGAAGAAGAGACCTGGTACAGACTCTTACCTGGCCTTCCTGCAACGTGGGCCCCCACAAACACTTGTCCTGCAGTCCCTGGTTCGAGGAGAGTCTTTCCCAAACCATTGGCAGCCTCTGGCCAGACACCGGGGATCCGAGGATCCCATGAAGGATCTCGCTCTGCTTGAAGGGATTCAGGATTCGGACAACCCTGAGCCTGAGTATGCAGAGAGTTTTCGAAGTTTGGAAGACAAAAGAGCTGAAGACATAGACCTAAAAGCGGTAGAGCAAGAAGAGCAAACTGGGCTTTATGATTGGCCACCTGTTCAAAGAAAAGAGGAATTCAACCAATCAGAGACGGAGAGAGGCAGTAAAAGATTGACAACTGTTCAGGGCCCTGTTGAAAGTAGCACCATTACCCCAAGTCATCTTTCAGAAGAGAGAAATGAAAGCAGATCAACCATTATTGAAGCAGAATCTAATGTTACGGTACCATCAACCACTGTATTTGACATTaagGTTGAAGAAGAGCCACAGAACACATCGTCTGCAACTACTGCACCTAAAGTCGTGGAAGACCTCAGTACAGAGACCGCAAACTTTAGTGCAGTCAACGGTTCATTCATCACTCCAGCCAACACTGAAGCTACACCGCAGATGACTTCAGAACAGCCAGAATCTCCTTACACATATGAGTGgacttttgtgatctcaccagAAGGACAACGTAGGGTGATGGAGGGGCAGCACAACAAATCTGTCATACTTTCTGAACTGTCAGAGGGTGTTTACGCAGTCAGAGTGATTGTGAAAGCACATCAAGCATATGGAGAAGGTTCTGTGGACTTGACCGTACACCCTGCAGAGAAAATAAACAAGCCTCCTAAAGCAGTCGTTCTTCCCAAGAGCCAAGATGTGCTGTTCAAAAAAGATTCTGTCTTAATCATTAACGGAAGTGAGAGTATGGATGATGCAGGGATTGTCAGTTATCTGTGGAAAAAGGTGGACGGCCCGTTTTGGACACCTGAAGGTCCTGTTAACAAACCTGTACTGCAGCTGAAAAATCTTTTACCTGGAGAATATACCTTCGAGCTGACAGTGTCTGATTCTGAGGGGCTGAGCGACTCCAGCACTGCCACCTTGAGGGTCAGCATCCCAAAAGATGAGCCTCCTCTGGCCAGAGCGGGCACAGACCGGGTCATTACCCTGCCTCTCAACCACCTCACCCTgtggggaaaccaaagcacagATGACCAGGCCATTACAAGCTACCTCTGGACACTCCATCCCAGCAGCCCGACCCGAAAGGTCACCATGCAGGATGTGAGATCAGCATTTCTGCTAGTCTCTGATCTAGAGGAGGGTCAGTACACGTTTCAGCTCACAGTCACTGACTCAAGAGGTCAACAGGATTCAGACACCatctctgtcactgtgctgccTGCAAACAGAGCACCAGTGGCTGTAACAGGACCAGACATACAGCTACTCCTGCCGGTCAACAGCATCACACTGAATGGCAGCGGCAGCACTGATGATCAGGCCATCAGCAGATACCAGTGGGACGTGATGagTGGCCCTCCAGGCTTGAAGATGAAAGATGCCAATAAAGCGGTTGCCATCGCGACAGGCCTGAGATCTGGGATTTACAAGTTGAAGTTGACTGTGGTGGATGAGCAGGGAGAAACAGACAGTGCAGTCCTGAGCATCACAGTTAAAGAAGCTAAAAGCCTGCCACTGGTGGCTCATGCCAGCGGCAGCCATACACTCACTTTGCCCAACAACTCTCTGGTGCTCAGAGGTTCAGTGTCCAACAGCGGACCAGCAAACGTGTCCTTTCTGTGGGTTAGAGATGAACAGAGCCCTGCTGCGGGGGATGTGTTGTATGGTTCAGATCACGAGGCCTCGCTTTACCTTGCCAACCTGGTAGAAGGAACATACCTGTTCCAGCTGCGGGTCACCGATGTCCAGGGCCGCTCAAGCACGGCTACAGCCACTGTGGAAGTACGACCTGATCCGCGTGAGCGAGAGGAGGTGGAACTTGAGCTGCAGGTGAGCGTGGCTCAAGTCAGTCAGCAACAGAGAGACACAGTGATCAGACAGCTGGCCGCACTTCTGCATGTGTTGGACTCAGACATCGCACTAAAGGCTCTACATGGACAGTCTGACATCAGCACAGTATTCAGGTTCTCGGTGCAGGGTCCTGATGGTTTGATCCCTGGCCCTAAACTTGCCCGCCTGCTGAGAAACCAGCTGTTGAGAGAGAAAAGCGACTTCTTGCTCTTTAGGGTCTTAAGAGTGGACACAGTCATGTGTTTGCTGCTGTGTTCTGGGCGTGGTCAGTGTGACCCCATTACAAAAAGCTGTTCCTGTGACCCTCTGTGGATGGAGAACCCCATCCGCCTCTTCATAGACGATGGAGAGAGCAATTGTGACTGGAGTGTGCTGTATGTCACAATCTCTTGTTTTGTGACAATCATTTTCATCTTGTCCGTCAGCTGGATCTGCGTCTGCTGCTGTAAAAGGGAGAAGCGTACCAAAGTAAGAAAGAAAACCAAGTACACAATACTAGACAATATGGATGAACAAGAGAGGATGGAGCTTCAGCCAAAGTACAACATTAAACACAGAAGCACAGAGCACAACTCTAGCCTGATGATGTCTGAATCAGAGCTGGACAGTGAACAGGACAACATTTACAATTACGGGAGAGTCCAAAAAGCTCATAACAGAATCAGAAACGGAGACACTCTCAGCCTTTGCCCTGTGGAGAGTTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000180470

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020073 lncRNA upstream 8598 36759130 ~ 36760076 (+) True XLOC_010112
TCONS_00021990 lncRNA upstream 154823 36579000 ~ 36613851 (+) False XLOC_010109
TCONS_00021993 lncRNA upstream 154823 36611244 ~ 36613851 (+) True XLOC_010109
TCONS_00021992 lncRNA upstream 159700 36606042 ~ 36608974 (+) True XLOC_010110
TCONS_00021989 lncRNA upstream 177333 36560692 ~ 36591341 (+) True XLOC_010108
TCONS_00021995 lncRNA downstream 23357 36955088 ~ 36958828 (+) True XLOC_010114
TCONS_00020081 lncRNA downstream 651220 37582951 ~ 37603069 (+) True XLOC_010115
TCONS_00021996 lncRNA downstream 701716 37633447 ~ 37641863 (+) True XLOC_010116
TCONS_00021997 lncRNA downstream 727789 37659520 ~ 37660611 (+) True XLOC_010117
TCONS_00021738 lncRNA downstream 781533 37713264 ~ 37713637 (+) True XLOC_010118
TCONS_00020071 mRNA upstream 8518 36748538 ~ 36760156 (+) False XLOC_010112
TCONS_00020070 mRNA upstream 48969 36671064 ~ 36719705 (+) True XLOC_010111
TCONS_00020069 mRNA upstream 65306 36650984 ~ 36703368 (+) False XLOC_010111
TCONS_00020067 mRNA upstream 605166 36126310 ~ 36163508 (+) False XLOC_010102
TCONS_00020066 mRNA upstream 605166 36126310 ~ 36163508 (+) True XLOC_010102
TCONS_00020079 mRNA downstream 538986 37470717 ~ 37630250 (+) False XLOC_010115
TCONS_00020078 mRNA downstream 538986 37470717 ~ 37630250 (+) False XLOC_010115
TCONS_00020077 mRNA downstream 538986 37470717 ~ 37630250 (+) False XLOC_010115
TCONS_00020080 mRNA downstream 651141 37582872 ~ 37628496 (+) False XLOC_010115
TCONS_00020083 mRNA downstream 945048 37876779 ~ 37879306 (+) True XLOC_010120
TCONS_00020072 other upstream 19350 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020068 other upstream 183889 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020056 other upstream 1042542 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020045 other upstream 1362787 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020039 other upstream 1487886 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020082 other downstream 839752 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020086 other downstream 1089288 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020097 other downstream 1364270 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020102 other downstream 1418992 38350723 ~ 38352278 (+) False XLOC_010130
TCONS_00020107 other downstream 1462682 38394413 ~ 38396795 (+) True XLOC_010132

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_02467451_02477544.mRNA True 2868 mRNA 0.51 17 CI01000016 2467451 ~ 2477544 (-)