RNA id: TCONS_00020081


Basic Information

Item Value
RNA id TCONS_00020081
length 1391
lncRNA type retained_intron
GC content 0.48
exon number 7
gene id XLOC_010115
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 37470717 ~ 37630250 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACAGACTCTCCACCTTCGCCATTTTAGCACGCCTCAATCCCGATGTGAACATGGATAAGACCCAGCTTCCATCTGTGACTCTGATCGTGGGCTGCGGGGTCTCGTCCCTCACCCTgctcctcctcatcatcatctATGTTTCTGTTTGGAGGTACATCCGCTCAGAGCGCTCTGTCATCCTCATCAACTTCTGTCTGTCCATCATCTCCTCCAATGCGCTTATACTCATCGGTCAAACTCAGACACGGAACAAGGTTGTTTGTACTCTCGTGGCTGCGTTTCTGCACTTTTTCTTCCTGTCCTCTTTCTGTTGGGTTCTAACGGAGGCATGGCAGTCGTACATGGCTGTGACCGGCCGCCTTAGAAACCGTATCATACGCAAGCGTTTCCTTTGCCTTGGTTGGGGTTTACCTGCTCTCGTTGTAGCAATTTCTGTTGGATTCACCAAGGCAAAGGGATATGGCACTGTTAACTATTGCTGGCTGTCTCTGGAAGGAGGGCTGTTGTACGCATTTGTGGGACCAGCTGCTGCTGTCGTCCTGGTTAACATGGTTATCGGGATTCTGGTTTTTAACAAACTGGTGTCCAAAGATGGCATTACTGATATGAAACTCAAGGAGAGGGCCGGGTATGCCTCATCGCACTCCTTCATCTCATTGGCTGAGTTCTGGGAAGAATTTCATTGGCCAGACCTTTGAAACATCTCTCCCCCACAACTACGCAGGAATGAAtacaacacagactcattgtgaatatgtacttatgtatacatttctggagagtgcaaattatgtagccagaggtacgaatggctgcattttgtttttcaaatgaacgctacagggtggtatgatgccgccgACGGCTtcgttttttttacatttttttatttgtactacCAACTAACTGCTTGCCtttgtgtggacggcttttccgctgttagcagtttgcccagtggcttgcCGCGTATGTCgtagcagtgcttaatttgtgaattgcgaggtccagAAACAGATAGGGGTAacagatccggcatgttacccaaGGAAGTAGAGGTATCACGCACAAGAGAAAAGATCGGAGGAAGTAGGGGGTGTTGTGGTTGGGATAGCAGGGTGTTGGATGGCGGACGGGTGTCGTGGACgaaagtaaagagggttggggagtcacagAAGAAAGTGATAGCAGACAGGAGAGGAAGGCGGTTGAGatggggatcggtaaaatgaggtgccagatcagatttcagaggtgccggatcaaGCGTATTCCAGGACAAATTAAGCTATGGTCAGTGGACTTCAGccgcagagcagagttgaccgcgatgacagggttcaagtctggtgaagaacagttccagaaagcaggtaaaacaaaaacaaaagac

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0043652 engulfment of apoptotic cell biological_process
GO:0016525 negative regulation of angiogenesis biological_process
GO:0007165 signal transduction biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0030425 dendrite cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0098978 glutamatergic synapse cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060607-12 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and engulfment of apoptotic cell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway; cell surface receptor signaling pathway; and negative regulation of angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite and postsynaptic density. Predicted to be integral component of plasma membrane. Is expressed in muscle; nervous system; and testis. Human ortholog(s) of this gene implicated in glioblastoma. Orthologous to human ADGRB1 (adhesion G protein-coupled receptor B1).

Ensembl:

ensembl_id ENSDART00000168086

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021995 lncRNA upstream 624123 36955088 ~ 36958828 (+) True XLOC_010114
TCONS_00021994 lncRNA upstream 793268 36768704 ~ 36789683 (+) False XLOC_010113
TCONS_00020073 lncRNA upstream 822875 36759130 ~ 36760076 (+) True XLOC_010112
TCONS_00021993 lncRNA upstream 969100 36611244 ~ 36613851 (+) True XLOC_010109
TCONS_00021992 lncRNA upstream 973977 36606042 ~ 36608974 (+) True XLOC_010110
TCONS_00021996 lncRNA downstream 30378 37633447 ~ 37641863 (+) True XLOC_010116
TCONS_00021997 lncRNA downstream 56451 37659520 ~ 37660611 (+) True XLOC_010117
TCONS_00021738 lncRNA downstream 110195 37713264 ~ 37713637 (+) True XLOC_010118
TCONS_00020095 lncRNA downstream 636976 38240045 ~ 38252100 (+) True XLOC_010127
TCONS_00021739 lncRNA downstream 1128718 38731787 ~ 38733942 (+) True XLOC_010134
TCONS_00020076 mRNA upstream 651123 36906693 ~ 36931828 (+) True XLOC_010113
TCONS_00020075 mRNA upstream 651220 36768674 ~ 36931731 (+) False XLOC_010113
TCONS_00020074 mRNA upstream 651220 36768674 ~ 36931731 (+) False XLOC_010113
TCONS_00020071 mRNA upstream 822795 36748538 ~ 36760156 (+) False XLOC_010112
TCONS_00020070 mRNA upstream 863246 36671064 ~ 36719705 (+) True XLOC_010111
TCONS_00020083 mRNA downstream 273710 37876779 ~ 37879306 (+) True XLOC_010120
TCONS_00020084 mRNA downstream 288666 37891735 ~ 37944314 (+) False XLOC_010121
TCONS_00020085 mRNA downstream 288686 37891755 ~ 37944480 (+) True XLOC_010121
TCONS_00020087 mRNA downstream 515935 38119004 ~ 38136670 (+) True XLOC_010123
TCONS_00020088 mRNA downstream 535177 38138246 ~ 38157299 (+) True XLOC_010124
TCONS_00020072 other upstream 833627 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020068 other upstream 998166 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020056 other upstream 1856819 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020045 other upstream 2177064 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020039 other upstream 2302163 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020082 other downstream 168414 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020086 other downstream 417950 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020097 other downstream 692932 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020102 other downstream 747654 38350723 ~ 38352278 (+) False XLOC_010130
TCONS_00020107 other downstream 791344 38394413 ~ 38396795 (+) True XLOC_010132

Expression Profile

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