RNA id: TCONS_00021997


Basic Information

Item Value
RNA id TCONS_00021997
length 1015
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_010117
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 37659520 ~ 37660611 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cagtgttaaatgcaaaTGTGTCTGTGAGTGCCATTGACCTATCAGCACTACTTAAAGTATAACCTCTCCTTGTACAACACTGAATATTTCTCTGAGACTTGCAGAACGGTGCCAGAGGAAAGAGCATCCAGGGTGAAAATGGTGTCCAGAAGATTATAAGCGGCAGTCATCTTCAATGCTTTATGAAGCAACAGTCATTCATCGCAATGGGTGAGACTAAAAAACGCAGTTGTGCTTCACAAAATCAACACAAACTGTTTGAAAGGGTATCAAGCATCTGTTCTCATCCAAAAACAGATTTAAGCAAGACGgcaaatttgttttctttgttttgtgcATGGCTTGAGCAAGTCAGACTACTATTGGTATACTGTATGTGGATGAAGACATGAATGCAATTGAACACAACTGACAGACATGAAGCACAATTGATCAGAGATGGTGTATGACAGGCGAGAGGGAAATGCCATTGCTGAAGGAGGAAGAAAAACACACAGAGCGCTCGATTCTTTGTGAAGAGCTCCAGACGGACCGATGGAGAGGCGTATTGATCAAGCCTATTGTCTGCAACCATCTCAGTAGGATCAATCATTTCTTATCCAGGCCACCTGAAAAGAAAATTTTCAGCATTGTGGAGCGTCACAGGTGAGCTCATGATGTGCAGCTAAACTGGGCTGCCCCCTAAAAACAATGAGGGTTTCTAAGACTTTCAGATACCTCAAACTGATGAATATGATTGTCCTCTGGTGAGGGCGtctttttatgtaaattttttttaaaagtacaagCCATGCTGCTGAAAACACCACCAAACCAGAACATGCCTTTCACTAGCTTTGTCTCCATCcacctttttttaatgtgcattttgtaATGTCACATAAAATAATGCTTAATTgaaacaccaagatgtgcatacatttcaAAAAATGTCCATAAAATAACTTTTTGGATAAACTTTTCATCTGATGCAACTATGGAAACTTATGgaaatttactgaataaatttcAGCAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021996 lncRNA upstream 17657 37633447 ~ 37641863 (+) True XLOC_010116
TCONS_00020081 lncRNA upstream 56451 37582951 ~ 37603069 (+) True XLOC_010115
TCONS_00021995 lncRNA upstream 700692 36955088 ~ 36958828 (+) True XLOC_010114
TCONS_00021994 lncRNA upstream 869837 36768704 ~ 36789683 (+) False XLOC_010113
TCONS_00020073 lncRNA upstream 899444 36759130 ~ 36760076 (+) True XLOC_010112
TCONS_00021738 lncRNA downstream 52653 37713264 ~ 37713637 (+) True XLOC_010118
TCONS_00020095 lncRNA downstream 579434 38240045 ~ 38252100 (+) True XLOC_010127
TCONS_00021739 lncRNA downstream 1071176 38731787 ~ 38733942 (+) True XLOC_010134
TCONS_00021998 lncRNA downstream 1963513 39624124 ~ 39627370 (+) True XLOC_010142
TCONS_00021999 lncRNA downstream 1967102 39627713 ~ 39628196 (+) True XLOC_010143
TCONS_00020079 mRNA upstream 29270 37470717 ~ 37630250 (+) False XLOC_010115
TCONS_00020078 mRNA upstream 29270 37470717 ~ 37630250 (+) False XLOC_010115
TCONS_00020077 mRNA upstream 29270 37470717 ~ 37630250 (+) False XLOC_010115
TCONS_00020080 mRNA upstream 31024 37582872 ~ 37628496 (+) False XLOC_010115
TCONS_00020076 mRNA upstream 727692 36906693 ~ 36931828 (+) True XLOC_010113
TCONS_00020083 mRNA downstream 216168 37876779 ~ 37879306 (+) True XLOC_010120
TCONS_00020084 mRNA downstream 231124 37891735 ~ 37944314 (+) False XLOC_010121
TCONS_00020085 mRNA downstream 231144 37891755 ~ 37944480 (+) True XLOC_010121
TCONS_00020087 mRNA downstream 458393 38119004 ~ 38136670 (+) True XLOC_010123
TCONS_00020088 mRNA downstream 477635 38138246 ~ 38157299 (+) True XLOC_010124
TCONS_00020072 other upstream 910196 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020068 other upstream 1074735 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020056 other upstream 1933388 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020045 other upstream 2253633 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020039 other upstream 2378732 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020082 other downstream 110872 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020086 other downstream 360408 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020097 other downstream 635390 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020102 other downstream 690112 38350723 ~ 38352278 (+) False XLOC_010130
TCONS_00020107 other downstream 733802 38394413 ~ 38396795 (+) True XLOC_010132

Expression Profile

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