RNA id: TCONS_00020085


Basic Information

Item Value
RNA id TCONS_00020085
length 4415
RNA type mRNA
GC content 0.48
exon number 26
gene id XLOC_010121
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 37891735 ~ 37944480 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCATGTGATCTAATACGACCAATAAGCTTTCAGTAATCCCCCGGTTATAACAGCGGGAAACTAACTAATAATAATGTGAATATGAAATAATTTATTGCATATAACGTTACATTTACCAGCAGTTTCTGTATTGTGTCAGTGAATTATGGCTCATAGACTGACCAAAGAGGAGCTGGATCAACAGTTTGAGCAGTTCTTGAAAGAGTCAGTCTCTGATGACTCTGTTGATCTGGGCACCAGCTCCAAACGTCCTAGTGTCCTTGACAGCTTGGGAAAAGCACCTGTCAGGCCAGTGAAGAAGGCCTCAGCGTCTGTGCCGTGGTGgcaagatgatgatgataatgatgatgacagTGAAGAGAAAGGGATGTCATCGACTGGAAGGTCCTTCCTGAAGTCTCTGAGGAAGACTCCATCCATCAAAGAAGTAGATGAAGAGCAGCCAAAGGAGCTTTTCTTGGAGGATGAAGGGAACAGAGACCATGTAATCCTTAGCAGAGACAGTCTTGAGCCTGAAGATTCGTTGGTGATACCTAGTGCCGGGGCTCGAGGGCTGGATACGttggatgaggatgatgatgatgccaGATTTCTATCTAATCTGAAGAAAGTATCCTCATCCTCTATTGACTTCTCCAGAATAAATCGAGAACAGGAGCTGTCTGCCCCAACCAGCCCACTGAGAAGAGAAGAGATGGATTCGACAATTGAGGAGGAACAGAGAATGAATAAAGACACCGCTGCTTCTCCTGCATATAGTGAAGATTTTGAGGAAGAGGCGAGTGACAAAAGTGATGTGGAGCCTCAAGAGAAGAAACCTGAAAGACTTGGGATGCTGGCCAAAGTGTCATTACACGACTCTCTAAATTCCACGGATGGAGCATTGGCTCCGGCAGTTCCAAGTTTGGCCGTTGCGAGAGAAAATCGTCCAGAAAGCAAACAAACAGACATGCCAGCACTGGAACCCGCAGTGCAATCATATGGTCAGAGTGGAGGGAGTGAGATGGAGGCACTGCAGGAGGCGTACAGGCAGATCAGCGGCTCAGCAGGAGTGTGTGAAGATGGACAAGTCGAGGCTGGCAGgactcctctttctctctctacaCTCCAGCCTGCGTCCACCGTGGAGTCAGATTTACCCACTGCTGAGGAACTTATGCAGCCCATAGGACCAGACAGCGGATTCACCCGTGGCTTCTCTCTCCAGCCCATAACTGAGGCTGTGCCCAGGAGCAGAGACAATCAAAGTCCATTAAGGATATCTTCAGACGAGAGCCCTTTCAGTTCAGCTAATGAAGGCTATGGAGGAGGTAATACAGCTAACCTTACAGGAGGAGAACATCCAGATTCCTATAAGTTCACTCAGAAGAGCATATCGGAGGAGATCAGAAGACTGATGCAAGAGCAGGACACCTCCTCTCAGGAACCTCCACCTTTAAAACCAAAGAAGCGCCAGGTTCCTGCCAGAAGCAATGCATCTACATCTGCTTCCTCTAGAAAAGCTCCGGTTCCATCGGTGAGGGTTAAAAAACCTGAGAGCAAGCCGTTACACAGAGTGCCAGCACCCAGCAGAGCTGCTCAAGCAGCCAAACCTCCATCTCCTCCAACACTGAGGAAAGCTCAGAACCAGACTTTTAAAAAAACCCAAAACctcaaccaaacacacacaatcaaagGTTTAGACACAAGTTTAAAGCTAAGCAGTGAACTGGTAGAATCTGTGCAGTCTTTTGCTGCATTCCTACAGCATCAGGTTGAAGCCAGCAGTCTTCAGGACAAAGGTCCTTTCCAAGCAAACAAGATTGCTTCTGAAGCAATGACAGCGCATAAGGGGATGCAAGAGAAGATGGATGGTGGTCCGGAGCTTGCATCGCTGGAGCGTCTCCGTCTGCAGCTCgccaagaaagagagagagctcaGTCTGAGGGAAGACCAGTTACAAGAGCAGCACAAGCAAGAGCTGACAGCCCTGAGACAGGAGAACTACATCTTACAGAGCAAGTTGCACCGTGCCGAAGAGGCCAGTAACAAACGGAAGTGGAGTTTTGGTGAAGCTTCAGACCCTGTGACTGAAGAGAAACTCAAGCTCATAGAAAAAGAGATGAAAGAACAAGAGACTCTGATTCAGGGTTACCATCAGGAGAACGAGAAGCTGTATCTGCAAATGAAAGCACTCCAAGCTCAAAGCAAACAGAACGAGGAGGCTTTGTTCATGGAGAACCAGAGACTTCTCACTGAGCTCTCCTTCGCTAGGGACCGGATGAACACAAACAACATTCAAAGAACCATCAGAGAGAGAAGCATTGTTGACCAAAGCTTCAACATTGCAGAGTTGACAAGTCAGGTACAAGCTGCACAGAAAAAGGAAGAACGGCTCCAAGAGGAGGTCCGCAGGCTGAAGCAGGAGAAACAAGCTCTGCATGTAGATCTGGAGATGATGAGGAAAGAGAGGGATCTTGCTAAAGTTCAGGCTGTGTGTAAATCAGGCGATAAAGGTTTCGAATTGAAACTGCTCCATGACAAACATCGAGAGGAGGTCACAGAGCTGAAGAAAAGACTGCAGTGGTACGCCAAGAACCAGGAACTACTGGACAAAGATGCAGCCAGACTCCACGCCGCCACCGCTGAGATTCAAAAGCTCACTGAGCAGGTAGAAAAGCTAAAAGCGGAGGTTAGCAGGAGGGCCAATGAGCAACAAAGAAAGGCAAAAGAAAAAGCAGGTGAAGCAAAAAGAATCCAAGACCTAGAGCGACAGCTCAAACAGAAGGAAGAACTCTTGAAACGCAGGCATCCAAATTCTCTGCCAGCCCTGATTTTGGCAGCTGCGTCTACCGGGGCTGAAGAAGATCGACTGGATGTCCGTTCTCTAGCTCAGTCCTCTCAGACAGCGGCTTTGTTAGAGAGACGTGTTCATCGCCTGGAGGCAGAGCTGGAGGGCCGAGATGAAGCAGCCAAACGCAGCCTCCGAGCAATGGAACAACAGTATCACAGAATCAAAcTCCAGTATGAACAGCAGATCTCAGATTTGGAGCAGCGTTTGTCTGAGAAGAGCCACAGCTATCCAGCCATCTCATCAGAGCTGATTAAATCCCACACTCAGACTTTAAAAGCAGAGCTGGAGGAAGTGAAGGAGGTCCATCAGAAGCAAGTGAGCGTCCTCCAGGCAGAAGTGGACTCTCTGCAAGAACAGCTCCGCCAGGCCCAGGCTTCAACACAAACAGAGAAGCCTGCCCGCAGCCCCTCACGCCACCAGCTCCACGCAGAGGCCGCACAAGCAGCCCGCATAGAGAGACTGACCCAAGAGCTGAACTCCAAGAGCCGCAGCATTCAGGAGCTGACCCGCACCATAGAACGTCTGCAGAGAGAAAGGAGGACCATGCTGTCAGGTCCTAGCCATGAAAGGCCCAACAATGAGCCCAAGCGACATTTGGGCACAGCCAAAGACACAAAAAAACCCTCAGTGGAAACTTTCCCTCCGACTCAAGATGAGAAGGACTATCATCCTGGAGCCTTCTCAGGAACACACATCTCTGAGGTGCAGCTGGAAAATGATAGTTTGAGGACTAAATTAGAGGAGCTGGAAGTACTGAGAGAAAAGGAGAAGGTTTCACTGCAGGCTGCGGTCACGCATGCACAGAATCAGCTTCTCAGAATTGAAGAGCAGAATGCTGAGCAGCTCACTTCAGTCAAGGCTGAGCATCGTAAAGAGATTGAGCATCTTCTGGCTCGTCATGCCCTTGAGCATTCCTCCTCCAGAGTGGCTGAACTCACCAGTCAACTCAACACACAAGAGATCATAGTACAACATTTACAAGGGCAAGTAAAAGAGCTCCAGGGAACCAAAGAAGCTCTGGCTGTGACGAAGCTCAGAGAGGAGACCCTGCAGAATCAGCTGTCTAAACTTCTAGAAGAGCTAAAAGAGGCCAAAGAAGCCCACAGTCCTGAACTAAAACACTTCACTAGCCTAGAGCAAAAAATTCAGTCCATGGAATTCAGATACAGTCAACGAGAGAAACAACTTCAGCAGGTAATTGCAGACACACGGCGGGTGGTGGAACAGGAGCAACAGAGTGAGGTGGAGCGCTGGAGGAAGCTCGCTCAAGGAAGAGCCAAAGAGCTGGAGGCCTTTAGAATGGAGCTGGACTCAATACTGGACGTCCTCCGAGAGCTTCAGCGACAGGGGGTAGTCATACCCATGCCAGAACACACATCCACTAACACGCACACATACCTGCCACTCCGATCCTGAAAAAAACTGGAATCATTGATGTGTGGAAGCAAGGGAAGGGGgtgtatttatattagttttttatatagATTATTTAATTATTGCTGAGAAACATGCAGGGTAAGCAACATCAAATACAAAGCTTTTGGTGTTAGTAACTAGGATTTTGTATTAAAGTTAATTAATG

Function

GO:

id name namespace
GO:0030030 cell projection organization biological_process
GO:0060271 cilium assembly biological_process
GO:0001947 heart looping biological_process
GO:0005814 centriole cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005879 axonemal microtubule cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-100922-266 Acts upstream of or within cilium assembly and heart looping. Predicted to be located in cytoplasm and microtubule. Predicted to be active in axonemal microtubule; centriole; and centrosome. Is expressed in head. Orthologous to human CEP162 (centrosomal protein 162).

Ensembl:

ensembl_id ENSDART00000142104

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021738 lncRNA upstream 178118 37713264 ~ 37713637 (+) True XLOC_010118
TCONS_00021997 lncRNA upstream 231144 37659520 ~ 37660611 (+) True XLOC_010117
TCONS_00021996 lncRNA upstream 249892 37633447 ~ 37641863 (+) True XLOC_010116
TCONS_00020081 lncRNA upstream 288686 37582951 ~ 37603069 (+) True XLOC_010115
TCONS_00021995 lncRNA upstream 932927 36955088 ~ 36958828 (+) True XLOC_010114
TCONS_00020095 lncRNA downstream 295565 38240045 ~ 38252100 (+) True XLOC_010127
TCONS_00021739 lncRNA downstream 787307 38731787 ~ 38733942 (+) True XLOC_010134
TCONS_00021998 lncRNA downstream 1679644 39624124 ~ 39627370 (+) True XLOC_010142
TCONS_00021999 lncRNA downstream 1683233 39627713 ~ 39628196 (+) True XLOC_010143
TCONS_00022000 lncRNA downstream 1687130 39631610 ~ 39632068 (+) True XLOC_010144
TCONS_00020083 mRNA upstream 12449 37876779 ~ 37879306 (+) True XLOC_010120
TCONS_00020079 mRNA upstream 261505 37470717 ~ 37630250 (+) False XLOC_010115
TCONS_00020087 mRNA downstream 174524 38119004 ~ 38136670 (+) True XLOC_010123
TCONS_00020088 mRNA downstream 193766 38138246 ~ 38157299 (+) True XLOC_010124
TCONS_00020089 mRNA downstream 215278 38159758 ~ 38199760 (+) False XLOC_010125
TCONS_00020090 mRNA downstream 215377 38159857 ~ 38198806 (+) False XLOC_010125
TCONS_00020091 mRNA downstream 222713 38167193 ~ 38200523 (+) False XLOC_010125
TCONS_00020082 other upstream 120155 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020072 other upstream 1142431 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020068 other upstream 1306970 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020056 other upstream 2165623 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020045 other upstream 2485868 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020086 other downstream 76539 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020097 other downstream 351521 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020102 other downstream 406243 38350723 ~ 38352278 (+) False XLOC_010130
TCONS_00020107 other downstream 449933 38394413 ~ 38396795 (+) True XLOC_010132
TCONS_00020117 other downstream 1202522 39147002 ~ 39158182 (+) False XLOC_010137

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_02235073_02261683.mRNA True 5025 mRNA 0.48 24 CI01000016 2235073 ~ 2262308 (+)