RNA id: TCONS_00020087


Basic Information

Item Value
RNA id TCONS_00020087
length 7266
RNA type mRNA
GC content 0.45
exon number 21
gene id XLOC_010123
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38119004 ~ 38136670 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCAAAACAGGAAGTGGCGTTTTGAGCGTATCAACCAATCGCAGCAGGAGAAAAAACAGAACCTCTGCCCATTTAGCGCATTTATTCGTCTCGTCTGTGACGTACCGGCAGGCTTTGTGTTCTTTCAATATATCACGTTGAATATATTTCTATATAGACTATAATCTgGATGAAGGGATTTTGTAAACGCCAGTCTTGACGTTAAAACTGGTCGGACCCGATTCCTGTCAGAAGaaacatgGATTCGGATTTGTTTATGGAGtgtgaggaggaggagctggagccATGGCAACAGCAGTCTATGGATGAACCAGCCGGAAATGCTGAAAGCAGTACTCCCTCCGTCACTTCCACTCCAGCCCCGGTGGTTGATGTTCCAGCTCCGCCTAAGACCATGGTGATCCCAAGCCTAACGTCTGTAGTAAATGCGGCGAACACGGTTCCGCTGATCACAAATACAAtaaCTCAACGTGCGGTTGTGCCGACTGAGATCCCTAAAGCAGTGCAAGGGCAGCCGGTCATCTTGGCACCAGGAGGAGGTGGACTGGGCACTGTGGCTCTGTCACAGGTTCTCCTGCCTGGAACATCTATTGCCAATGTTACCAACAGTCAGCCGATCTACTTTACCACACAGGGTCTTCCTGTCCAGAATATCCAGCCTGGCCAGGGTCCAATGAGTTTAGTGCTGAATGTCCAACAAGGCCAAACTGTTCGACCGATTACTCTACTCCAGGCACCTGGCACACAAATTTTCAAACCAGCCATCGGAGCAACCCAAATAATTACCCAGCCTGCTCAAATAAGGGCTGGAGCTCCGGTTGTAAACAGAGCCCAAACGCCTAGTACTTTCAGCACAGTGCAGATCCCTGCTACTCTCACTTTTCGAACCACAAACGCGGTCACCCCAACAGCTGCCAGTTCTCTACCCATCGTATCTTCTACAACCATTACTCAGCCTACCAGGACCACTACTAAAATAGtgaCAATAAAGCAAGGAAATGGACCCCTAGACATGCAAAACCTAATGAATCTTGTGAAGTCTGTGAACCTTCCTGGTGGGGCTCAGGCGCAGACATTTGTAGTCATGAGCAATCAAAATACCAAAAATGGTCCTGTTGTTTCTTCTGCTGTTCCTATCATCTCACAAAATGTCATCCAAACGATCCCACTTCCAAATGCAACCTCATCAACAACCACCACTCATTTGTGTCCTCGTTGTGGAGCTCAGTTCAGAATGATTGAGGCTCTACGCGGTCATATGTGTTTTTGCTGCCCTGATCTGGTCCACATGACTGAAACAAGCAGTACCCCAACAGCTGTGAAACCCCCAGCAACACCACCTAAGAGTGCCTCTGTTGTGCCTAGTGCCAAGGTGGATAGCCCACCTAGCAAAACAGGAGATAGCCATCCCAGACTCGTCATGCTGGTTGATGATTTCTACTACGGCACATTTGAGGGAAATCGAGTCTATGTACCAATGGACAACTCAAAAGAACCATTATCATTCAGATGCCTGACCTGTAGCAAGAAACTAAAGAATAATATTAGACTTATGAACCATATGAGGTACCATGTTGAACTGGATCAACAAAATGGGGAAATGGACAACCACACATCCTGTCAGCATTGTTTCCGTCGCTTTCCTACACCGTTTCGTCTGCAGTGCCACCTTGAGAGTGTCCATACCTCCATTGAATCATCTACCAAGTGTAAGATATGTGAGTGGTCCTTTGAGAATGAGCCAGTGTTCCTGCAGCACATGAAGAACTCCCACAAACCCGGAGAGATGCCTTATGTATGCCAGGTGTGTGAATACCGTTCCTCCTTCTACTCTGATGTGTTTAACCACTTTCGTACCTGGCATGAGGATACCCGCCACCTTCTGTGCCAGTATTGCCTGAAGGTTTTCAAGCATTCCACCAGTTACCAGCAACATTATGTTCGTCATCAGAAATCAACAGTTTACCATTGTAACAAATGCCGTCTTCAGTTCCTTTTCACAAAGGACAAAGTTGAGCATAAAATAAATCACCACAGGACTTTCCGAAAGCCCCGTGAATTGGATGGACTGCAGCCTGGAACAAAAGTGACCATTAGGGCATATGTTGGGAAAAAAACACCAGGTCAGTCAGCTTCAAAAGCATCCACTAATATTCAGAAGAATAGTATTAGCAGTTCACAATCGACAACTCTAAGTGGCGACCAGCAATCAGAACAACAGCAATCTGGGAAGAAACAGGTCAGCAAGATGTTTCAGTTCCTGTCCAAGTTCCAGGAGCAGAGGGCTCAACTGGGCAGACATAAGTGTGTGGAGTGCACTTTTGACATTCCAGACTTTGTGAATCACTACCCCACTTATGTTCACTGTTCACTCTGCTTCTATAGCACGTGCTGTTCTCGTGCTTATGCAAATCACATGATCAAcaATCATGTTCCTGGAAGGGCTCCAAAACCTTCTAAAAAGGGGCCTCCAAGCGTTGTGAAGCTGACTTGTGCAGGTTGTGAATACTCCACTCCTCACGGAAATTTGATGGCCAAACATCTCATCAAGTTCCCTGATCACTCCTACTGTTTATTCATGCGCAAAGAGTGTTTGGAGACAGATATTGAGTTCTGCCATGTTGAGGAGGAGGTGGAGGGTCCACAAGGGGATGAAGCTAGTGATGTTGGGACACAGCCTGACTGGTTGTCCCTGAAACAGTGGAATGTGCCCAAAGAGGAAGGAACAGTGCCAGAGTTCATGGAACGTTGTGGCCCACGGCATATAATGACCAGGAATCATGATGTCCTCGACTACTTCCAGGTTCTGTTTCCTGATGCCCTCTTTGAGCTGATTGTTTGTGAGACCAACGCCTATGCCACTTATTGCTGCTCTTCAGGGCAGGGGGACACATCTTGGCACCCTGTGTCTGTACAGGAAATCAAAGGCTTTTTTGGTCTCTCTATCCTCATGGGGCTTCAAAACCTGGTGGAACCGGACTCGTACTGGACCTGGGAACAACACCAAGGCCGCTATGGCTCTAGAACATGGGAGCTGGTTTACAGGACCATGTCAGTGAATCGTTTTAAGCAGATCAGCACTTACATCCGAATGAGCAGCATGCTTGTGGAGAATGACAGCCAGAGTGCTGACAAGTTGTCATTTTTTCAGCCGATGCTGAGCATCCTGGAGAAAAGCATGCAAGAGGCCTACAGTCCAAACAAGTGCTTGACAATTGATCAAGCTTTCCTACCGAGCCATGATAAGGGAACGGCTCAGGAGAAGAGTAAAAATTCTCAGCCAAGGATATGGCTACTGTGTGACTCAAAGTCAGGCTTTTGCCATAAATTGCTGGTCTCAACACGACAGGAGAAGCACAAAGACTTGGGAAAATCAGTTGTGCCACATCTCACAGAGGGTCTTGAGGGTAAACATCACAACATCTTCTTGTCCAGCTCACTTGCCTCTGTGCAACTCATGAAGGATCTCTTTGATAGTGGTATATACTGCTCCAGCTCTGTCCTGCCACAAAGTGCAGTTTTGCCCAAGGAGTTTTGGGATGAACCTCCACTGGAAAATCCAGGCAATTTTAAACAGTATGAGTTCCCCCCACTTCTTGCCACTAGATGGAAAGATACCAAAGAATTGGTATGCCTCTCCACAAATGCCAACGCAGGCCATGAAGATGTGGTGTGGAGGAGGTCTCCCACTAAAATGGGTGAGCTTTATACTATTGAAAGGCCACAGGCCTTCAAGCTGCTCCAAGACAACATGAGAGGAGTCGATATCTGTAATCAGCTGCTGACGTGCAACCAACTTGGTGGGCTAGATCTTGACACCAACTGGCGGCGTCTCTTCTGGTTCTTTGTCAACTTGAGCATCATCAACTCTTTTATTGTCTTACGAGAGACCCGCAAAGACAACCCACCAGTGTGGCTCCCAGGGGGTCACTTTTCCCAGGCCGTTTTCCGTAAACGTCTGGGCTACCAGCTTGCCAAGTGTGCTGAAAGACACACTCTCCAGAACCAAATCCACAATAGCATGATTGAGCAACAGACTGTGAAAAAAGAAAGTCAAGAGGTGCAAGAAGAGGTCAGACATCGATTAGGCAAAATTACCAGAAGGGCGAGGAGATGTAAAGTTTGCAACTTGAAAAACATGCGTCATGAGAGCATGTATGGCTGCACCGCCTGCCATGCGAATCTGTGCAAGCGTTCTCGCTGCTTCTGGGAGTTCCATGGTTTCCCAACTAATTATCAAGgTAGTGCAAAAGTTGGATTCGTTGACTCTAAGAGGGACGGCACAGAGCCAGGACttaaacataaaacagaaatgttGGAAAGAGGCCAGGCCAAATCCTCAGTGGACATCAGTAATGTTTCACAGGGTGCCACTGCTGGCCAGGACGAAGACgtggaccaagaaatggctcctCTGGAAGACGAAGACACAGAAACAGACACTGATACGGTTGAAAGCAGCGAGGAAGTCCCACTTCGAACAGTGGCTAGTGAGAAAGAAAAGCGATCACTAACCAAACCAACACAGCCTGTGAGAAACAGAGAGGAGTCTTTGACTATTCACCAGCGGCGAATACTTCTTCTTGCACTATGTGCCGGGATCCAAAAAGCAGCAAAAGAGATGGACACCAAACCGCAGCTCATCAAGACCTGGATTCAAGACAAGGAGGATCAGTTAAATGAATGCTGCAGCAGTATCTGTGGAGAGGCTGTTGATCGTCTAGTACAGTGGGTTCTGACACAACGAGAACAGCAGCGTCCTATCAATGAGGCGAGATTGTTTGAAAAAGCTTCAGAGCTCCAAAGCCAGACCAATGAAACAAGTTCATTCCGTATTTCATACGAGTGGGCTGTGAACTTCATGATGCAGCACAAACTGGGCTTGGATACCTGTTTCACAGTACAAAGGGAACTCCCTAGTGCCATGGAAGAGAACTGTCGTTGCTTCAAAGAATTGGTGCATGGTCAAGTTAAGACCAACAACGTTCCACAGTGTGTCATTGGGGTTATGGACCAGCTTTCCGTGTTTGTGGACATCAATATGTTGAATGAGAAAAACAAGGTAAGACGAGACACAGCTATTCAGTTTACCGGGTCTGGGAAGCCTTTCGTAAAGATTTACCTTGCAATGCTTGCAAATGGTACGATGCTTCCTGCAGCACTCTTCACCAGTCACACTACGAGCACACTGAGCAGCACACCAGACACAGTCTTGATTATGGCCAAAGAGGAAGGTTACAAGGCAACAGAAGAGCTAGAAATTTGGGCCACCAAAGTGTGGAAGCAGCATCTCGACTCGCAGAATGAGAAGGAAGCGCTGCTGGTTTTGGATAGCCATCATTGCCTGACGTCTGAGTCCATTATTTCTACAGTCAGTAGCACCAAAACCTTCCTTCCAACCATTCCGGCAGGTTGTACATGCCGACATCAACCTTTAGAGATGTGCGTACGCCCTGTGCTCCAAAGGTTGTTTTTATCTCGTTGGGCACAACAGCCTAAAGAATCAGTTCAGCCTGAAGACCTGATGCAGCTTCTAGTATCCTGGTTAGACAAGGCCATGTCATGCTTCTCAAGTAGGCCTGAATTTATTCAACATTCATTCTGCTTGGCTCATCTGCTTCCGGATCAGGAGACACATACAGATTTGCCTGGTACTTCTGTGGAGTTGCTAAATATACTTTCAGAAGCAACACTGGGACCAGAAGTAGTAGATCTGGAGTCagcagatgaagaagagccaatGGACACACATTCTGTAGACAACGTAACTGAGAAAATAGATCTTACAGAGGAGCAAGAGGATACGGAAAATGAACTAAACGATGACAAAGCGAAAAACACAGAACAGCAAAAGGAAACAAATGATGAATGTTTGGAAATCGCAAGCGAGTCCACCGATTTCTCACATTCGTCGCCTGAGCATGAGACCCCTTCACACAACTCTGAACCAGATCATTTGTCGGAATCTGGTCTGGATGCTAACACTGATCAAACGGATTCAGCAAACAGGTGATATTTGATCTACTAACAGACGCTGGTAGATTTAACAGAAGGACAGGCCTTGCTGAATGTGACTGGTTATTTAATTTACAGCCTATTATTTGGTGGTGTGAAAatggggaggaaaaaaaaagttttttaatcttaaaaactGTATAGATTTATAGGATAGACGTTGCATGATTGGGTTTTGCTAAGTTTTTCTACCTACTTTTATTTCTGTTGTTTATTCACTAGCATACAGTAATACAAAAGCTCCCTTTTTTTGTCTGTTGACAGACAATATTTACTTATATTCCCCATCCTCTGAAAGTTCATCACAGGTTTTTGCCTGTTTATGTTTTAGTTATTTCGAAGATGTAATGGGAGAAATTTGTTTGATAAGCCAGCTGCGACCTGTATTGAGTGATTTGACTCAAGCGTGTGGGTATTGGGTGGATGaaagtattgtttgtttattttttgttgttgttgtcctgCCCCTCTCTTACAGTTTATGTGTGTCCAACGCAGGATGAGTATCAAAAATCATGCGATTTAAAATCTGATAACATTTGAATTGAAGAACGATACAAATGCTGTTTTGAATAatgctatttaaaattatttattcaatgaTTGACCGTAAATTATAGCCTATTATTCCATAGCTTTACAGATTCTGTTTGACATCCAACCTTATTGCATTTTATGACACATGCTACAGTTCAGCCTGTAAGATTGGTTGACAGACTATCTTGCAGCACTTCCATTTTGGTTATTTATGTAGTTATCATATACGTTTACCATTGAGAGAGCATTGATATTGAATGGAGTGTGATCAGTGAGTATACATTCAGTACTGATTTCAGCATCTGAATTTACTGTAGCGACCACATGATGGTGTAACTACACTCCAGGTGTCATCTATTGACATTCAATTCAAAGAGGTATTGATGCACTTTATTAGTGCTCTTCTATGTTTGTAAAGGTGTGTACTTTGATTTCATCTCTGTTTGCTGCAGCAATTTTGTGTATAATTTACATGTTGTGGGACTTCTTGTACAGTCTGATTGCGAAGGTAAGTGGACGTTTATAGAAATGAGGGTCTTTTGAATGTGCTGTTTTGTTTAAACTGCAAAGAGGACTAATGAATAATTGATCATTGAAAAAAGGCGTTGCATATGTGACttcccatttattattattatttttttaatttcttgtgaataaaatttaataaacagtgTGTGCATAAAGCCTTTTTTCTCACAcgtttatgtttt

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100609-3 Predicted to enable metal ion binding activity. Human ortholog(s) of this gene implicated in White-Sutton syndrome. Orthologous to human POGZ (pogo transposable element derived with ZNF domain).

Ensembl:

ensembl_id ENSDART00000132087

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021738 lncRNA upstream 405367 37713264 ~ 37713637 (+) True XLOC_010118
TCONS_00021997 lncRNA upstream 458393 37659520 ~ 37660611 (+) True XLOC_010117
TCONS_00021996 lncRNA upstream 477141 37633447 ~ 37641863 (+) True XLOC_010116
TCONS_00020081 lncRNA upstream 515935 37582951 ~ 37603069 (+) True XLOC_010115
TCONS_00021995 lncRNA upstream 1160176 36955088 ~ 36958828 (+) True XLOC_010114
TCONS_00020095 lncRNA downstream 103375 38240045 ~ 38252100 (+) True XLOC_010127
TCONS_00021739 lncRNA downstream 595117 38731787 ~ 38733942 (+) True XLOC_010134
TCONS_00021998 lncRNA downstream 1487454 39624124 ~ 39627370 (+) True XLOC_010142
TCONS_00021999 lncRNA downstream 1491043 39627713 ~ 39628196 (+) True XLOC_010143
TCONS_00022000 lncRNA downstream 1494940 39631610 ~ 39632068 (+) True XLOC_010144
TCONS_00020085 mRNA upstream 174524 37891755 ~ 37944480 (+) True XLOC_010121
TCONS_00020084 mRNA upstream 174690 37891735 ~ 37944314 (+) False XLOC_010121
TCONS_00020083 mRNA upstream 239698 37876779 ~ 37879306 (+) True XLOC_010120
TCONS_00020079 mRNA upstream 488754 37470717 ~ 37630250 (+) False XLOC_010115
TCONS_00020088 mRNA downstream 1576 38138246 ~ 38157299 (+) True XLOC_010124
TCONS_00020089 mRNA downstream 23088 38159758 ~ 38199760 (+) False XLOC_010125
TCONS_00020090 mRNA downstream 23187 38159857 ~ 38198806 (+) False XLOC_010125
TCONS_00020091 mRNA downstream 30523 38167193 ~ 38200523 (+) False XLOC_010125
TCONS_00020092 mRNA downstream 31213 38167883 ~ 38187269 (+) True XLOC_010125
TCONS_00020086 other upstream 97870 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020082 other upstream 347404 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020072 other upstream 1369680 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020068 other upstream 1534219 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020056 other upstream 2392872 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020097 other downstream 159331 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020102 other downstream 214053 38350723 ~ 38352278 (+) False XLOC_010130
TCONS_00020107 other downstream 257743 38394413 ~ 38396795 (+) True XLOC_010132
TCONS_00020117 other downstream 1010332 39147002 ~ 39158182 (+) False XLOC_010137
TCONS_00020126 other downstream 1875199 40011869 ~ 40011991 (+) True XLOC_010148

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_02337039_02343109.mRNA True 1789 mRNA 0.49 12 CI01000016 2337039 ~ 2343109 (+)
eurasian perch (Perca fluviatilis) TU108312 False 459 TUCP 0.60 4 NC_053118.1 42384346 ~ 42387280 (-)
bowfin (Amia calva) AMCG00012447 True 3108 mRNA 0.65 10 CM030138.1 18329924 ~ 18350901 (+)