RNA id: TCONS_00020089


Basic Information

Item Value
RNA id TCONS_00020089
length 4300
RNA type mRNA
GC content 0.47
exon number 11
gene id XLOC_010125
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38159758 ~ 38200523 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTACACTCACTTTCTTAGCGAACCACACCGGCTATACAGCAACAGGAGACGCGCAGCTCCCAAATGGGGCACTTAAAACACAGATAAACCGATTACTTAAGCCTTCGCCCGGTTTATTTTGAGGGGCCTGAGAGTGTGTGGCCATGGGTGATACAGAGCTGGAGCTTTCTCCCACCCATCTTGAGGAGCTACAGAAAAGCCCCTCTACCTCCACCACCTCCTCGCTGTCCCTCCCCTCATCACCCTCCTCTGGCCCACATCCCCTCACCAGCTCCAGCCCGAGCACCAGTGAAGGCTTGCCCACCTCCAGCCCCCCTCTGGATGTCATATCCGAAGGATTGGGTGAGCTCAGCCTTGTCATCGACACTGAGGTGGCCAAGAAAGCCTGCCAGGAAGTTCTCCAAAAAGTGAAGTTCCTGAAGGGCGATGGAGAAGTATCTTCAGCCAGCTCAGAGCCCATTTTGGCGAATGGCACAGCTCATCCCGAGGCCAACGATGGAGGACAACCTCCCAAGATCAGCGAGGAGGAAGTGGAGCCCATAAAGAGCGTGCGTCGTCGTCAGAAGAACAACTCCTCCAAGCAATCCTGGCTCCTGCGTCTCTTTGAGTCCAAGCTGTTTGACATCTCCATGGCCATCTCCTATCTGTACAATTCCAAGGAGCCTGGTGTGCAAGCCTACATCGGTAATCGCCTCTTTAGTTTTCGTAATGAAGACGTGGACTTTTACTTGCCCCAACTGCTCAACATGTACATCCACATGGACGAGGACGTGGGTGACGCCATCAAGCCCTATGTGGTCTACCGCTGCCGGCAGAGCATCAATTTCTCCCTGCAGTGCGCCTGGCTGTTGGGGGCCTACTCTTCTGACATGCACATCTCTACGCAGCGTCACTCGCGTGGCACCAAACTGCGCAAACTCATCCTGTCAGACGAGCTCAAGCCCTCCAGCCAGCGCATCCGCAGGGAGGTGCCGCAGCCTCCCCCTCCCTACCCCCCGCCCCTCCATCACGGTCCGGGCATGAGCGAACACAGCCTCTCGCCCTCCAAACGCACCCACCAACGTTCCAAATCCGATGCCACCGTCAGCATCAGCCTCAGCAGCAACCTGAAGAGAACCGCCAGCAACCCCAAAGTAGAGACCAGTCAGGATGAGCCTGTGCGTCTGACCCCTCAGAGGGAGTTCATTAAGTCTCTGATGGGGATTGGAAAGAGGTTGGCCACTCTGCCCACTAAAGAGCAGAAGACTCAGAGGCTCATCTCAGAGCTGTCACTACTAAACCACAAGCTGCCTGCCCGGGTCTGGCTGCCCACTGCTGCCTTTGACCACCATGTGGTGCGCGTGCCCCATACGCAGGCCGTCGTGCTCAATTCAAAAGATAAGGCACCTTACTTAATCTATGTAGAAGTTCTGGAATGTGAAAACTTTGAGACGTCGAGTGTGCCTGTGAGGATCCCTGAAACACAGATTCGCAGCACACGATCTGTAGAGAATCTCCCGGACTGTGGCATCACACCCGACCAGCGAGCCAGCAGCTTCTCCACGGTTCCCAATTACGACAACGATGACGAGGCTTGGTCTGTTGATGACATTGGAGAGTTACAGGTGGAGCTTCCAGAAATCCACACCAACAGTTGTGACAACATCTCCCAGTTTTCAGTGGACAGCATCACCAGCCAGGAGAGCAAGGAACCTATTTTTATTGCAGCTGGAGATATCAGacGACGCCTGTCTGAGCAACTCGCCCACACGCCGACCACATTTAGGAAGGACCCAGAGGATCCTTCAGCTGTAGCCTTAAAGGAGCCATGGCAGGAGAAAGTGAGGCGGATCAGGGAGGGCTCCCCCTATGGCCACCTGCCCAACTGGCGTCTACTTTCTGTAATTGTGAAATGTGGCGATGACCTAAGACAGGAGCTTCTCGCCTATCAAGTGCTGAAACAACTGCAGATTATCTGGGAGCAGGAGCGGGTTCCCTTATGGATCAAACCCTACAAGATCTTGGTCATCTCTTCAGACAGTGGCATGATTGAACCAGTGGTCAATGCTGTGTCCATTCACCAGGTAAAGAAACAGAGTCAGCTTTTACTGCTCGATTACTTCCGGCAAGAACACGGCAACTTCAACACAGAAGAATTCCTTACAGCTCAGCGCAACTTTGTTCAGAGCTGCGCAGGATATTGTCTCATCTGctatctgctgcaggtcaaagacCGGCACAACGGAAATATCTTGCTGGACTCTGAAGGCCACATCATTCACATCGATTTTGGCTTCATCCTTTCCAGCTCTCCACGAAACCTAGGCTTCGAGACATCAGCCTTTAAACTAACCAGTGAATTTGTTGATGTAATGGGAGGTCTGGATGGAGACATGTTCAACTATTACAAGATGCTAATGCTCCAAGGCCTCATCGCTGCACGCAAGCACATGGAGAAGGTCATCCAGATTGTAGAAATCATGCAGCAAGGTTCACAGCTCCCCTGCTTCCATGGCTCCAGCACTATCCGCAACCTGAAGGAGCGATTCCACATGAACCTGACGGAGGAGCAGCTGCAGGTGCTGGTGGAGCAGATGGTGGACGGCTCCATGCGCTCCATCACTACCAAACTGTACGACGGCTTCCAGTATCTGACCAACGGTATCATGTGAGAGAGGACTGGAGCGTTTAAAactggaagagagagagagagagagagagagagagagagaaaaaaaaggctGCACCACTTTAAATACCACTCCCTTAAGCACCCGTTTCTACACCTGTCAGACTGATTAGATCTCTAATGATggattatttttgttagtttttttatcCTGACTGAAGAGAGCTGTGAAGTTACTGTTTGTCGTCTTTTTCATCAGCCTTTCTTTTCGTTTAAACCCTTCTCTTTTTGGTTTTTGTCATGTTGTCTTGCAGTACTCTGGATGCCCAGAGATGAGTTTTATCCAGCTTTCCAGTGCCTCATTTAAACACTAAGCTGCTTTGTGACTTCTGGTTTTACTCTCACCTGTGTACTGACCGACTTCAACACCccataatatcatcatcatcatcatcatctgcttTCTTTTTTGTTGGCATACCACTAATGCTATGTGTACACTTTGGATGAATAACATTCAAAAATTCAACATTGAGACAGGAAACAGGGGATGCTGAATCAAAGCCTGTAAATTGCATTGTGTACCGAGGGAATCGGGTGGTAAACGCTGCTGCGTTGTTCAGCTTTGTGAAGTCAGTATTACGTGAACCATTtgagatattcagcctagtgctGTACAATTATGAGACTGTCAAGTCATGAAATGCTCACTCAAAGTGCTCTCGTTCACCCCTGTGATGAGCACTTTTATGCTGTTATGGGGTCAAAGAAGCGTTTTTTTAATCCAGTATGGATGTGTTAATCGTCAAAACACCAAAGACAGACCATTGACGGCACCGATCACATGAGAGTTTTAATCTTCGGCTGATACAGAAGATAATTAGGACCTAATAAAAAGATCTCGGTCTGTTTTCTAggtcaaaataaatgtataaagaaACTGTTTTGAGTTTCCAAAGGTCTGGACTGAAATGCGTTGGACTGAGAGATATGCACACACTATTTATTGCCCCTTTTACACAGATATGTCATATACTTACACTCTCAACTTGTCTTCTGTGGATTTCATTTCACTTTGTTGTTTTGTTCAGCGCAGATTGTACAGCTAACCTGAACTGTAATGTGCATCTTTACAGCTGACCTCAATCTGAGGTGGGCAGCCATGTTTAATTGTGACTGTGAGCCActggagtttttgtttttttactaactAAACAGAGAGAAGTTGTTTAGAATCTGCTGCACAGGAGAAACGGAAAGGGCTATGACAAACAAAATCTACACattaagtcttgtttttttttcctacacATGTACAGGTATAAAAAAATAActtcttcttttttattattattattttattattattattttcgttAATTTGATAGAAGTTGAGGTGTGTGATGAGCCTCGTCTTATTTCCCTGTGATCTCAGTGCTtctcttaatagttttaatttagcTTCTTTCAGCAGAAGCTATGATTTCCTTTCATTTGTTTGCCCGTGCGAGGGCAATTTAGATGACTTGTATGTTTCCAACAGCTTAACTTTTCTCTTTACTGTTTTATACTTCTATGGTTTCAGAGTCAAACTTTCCTTTTGAAACTTGTAAAATGGACCAGCTCTTAAGATCATGTGAATAACCTTCCTTGTGAATGTTCCtttgtataataaattaaatgttccCGTTC

Function

GO:

id name namespace
GO:0060872 semicircular canal development biological_process
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0016310 phosphorylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0030867 rough endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0052742 phosphatidylinositol kinase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0004430 1-phosphatidylinositol 4-kinase activity molecular_function

KEGG:

id description
ko00562 Inositol phosphate metabolism
ko04070 Phosphatidylinositol signaling system

ZFIN:

id description
ZDB-GENE-061013-96 Predicted to enable 1-phosphatidylinositol 4-kinase activity. Acts upstream of or within semicircular canal development. Predicted to be located in mitochondrial outer membrane and rough endoplasmic reticulum membrane. Predicted to be active in cytoplasm and membrane. Is expressed in brain; head; pharyngeal arch 3-7; and semicircular canal. Orthologous to human PI4KB (phosphatidylinositol 4-kinase beta).

Ensembl:

ensembl_id ENSDART00000058666

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021738 lncRNA upstream 446121 37713264 ~ 37713637 (+) True XLOC_010118
TCONS_00021997 lncRNA upstream 499147 37659520 ~ 37660611 (+) True XLOC_010117
TCONS_00021996 lncRNA upstream 517895 37633447 ~ 37641863 (+) True XLOC_010116
TCONS_00020081 lncRNA upstream 556689 37582951 ~ 37603069 (+) True XLOC_010115
TCONS_00021995 lncRNA upstream 1200930 36955088 ~ 36958828 (+) True XLOC_010114
TCONS_00020095 lncRNA downstream 40285 38240045 ~ 38252100 (+) True XLOC_010127
TCONS_00021739 lncRNA downstream 532027 38731787 ~ 38733942 (+) True XLOC_010134
TCONS_00021998 lncRNA downstream 1424364 39624124 ~ 39627370 (+) True XLOC_010142
TCONS_00021999 lncRNA downstream 1427953 39627713 ~ 39628196 (+) True XLOC_010143
TCONS_00022000 lncRNA downstream 1431850 39631610 ~ 39632068 (+) True XLOC_010144
TCONS_00020088 mRNA upstream 2459 38138246 ~ 38157299 (+) True XLOC_010124
TCONS_00020087 mRNA upstream 23088 38119004 ~ 38136670 (+) True XLOC_010123
TCONS_00020085 mRNA upstream 215278 37891755 ~ 37944480 (+) True XLOC_010121
TCONS_00020084 mRNA upstream 215444 37891735 ~ 37944314 (+) False XLOC_010121
TCONS_00020083 mRNA upstream 280452 37876779 ~ 37879306 (+) True XLOC_010120
TCONS_00020093 mRNA downstream 2080 38201840 ~ 38238909 (+) True XLOC_010126
TCONS_00020094 mRNA downstream 40267 38240027 ~ 38266885 (+) False XLOC_010127
TCONS_00020096 mRNA downstream 77579 38277339 ~ 38298199 (+) False XLOC_010128
TCONS_00020098 mRNA downstream 138023 38337783 ~ 38347556 (+) False XLOC_010129
TCONS_00020099 mRNA downstream 138961 38338721 ~ 38347157 (+) False XLOC_010129
TCONS_00020086 other upstream 138624 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020082 other upstream 388158 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020072 other upstream 1410434 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020068 other upstream 1574973 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020056 other upstream 2433626 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020097 other downstream 96241 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020102 other downstream 150963 38350723 ~ 38352278 (+) False XLOC_010130
TCONS_00020107 other downstream 194653 38394413 ~ 38396795 (+) True XLOC_010132
TCONS_00020117 other downstream 947242 39147002 ~ 39158182 (+) False XLOC_010137
TCONS_00020126 other downstream 1812109 40011869 ~ 40011991 (+) True XLOC_010148

Expression Profile

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