RNA id: TCONS_00020094


Basic Information

Item Value
RNA id TCONS_00020094
length 2106
RNA type mRNA
GC content 0.47
exon number 8
gene id XLOC_010127
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38240027 ~ 38266885 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCACAGCTCTGGATTCATAACTTGCACACAGTGAAGCGCTGAGGTCCTCTACACATTTCGGTACACTGAAGGGCATTTTTAAACTCTTTAGGATATTCCGCAACGTGAAACCCCTCGTGCTCCGTGTAACAATGGAGGCGTATTTACGGAGCTGTCGTGATGTGCTGAAGAGTTGTAGTAGGAACAGCCCAGGGCTGCATGTCGTAATGGGAAATGAGGCTTGTGATATGGACTCCATGGTATCAGCCCTGACCTTCGCCTACTTTCTTTCAAAGAGTCTTGATTGTAAGAGGATACCTGTGCCTGTGCTCAATATTCCACGCGCTGAGTTCCCTTTGCGGTCAGACAGCATCTTTCTGCTGAGAGAAAGCGGTCTGTCGCAGGACTACCTGCTGTTCAGGGATGAGGTGGATCTCCATGGCCTGCACAAGAACAAACAGCTGACATTGACACTGGTCGACCACAATGTCCTGCCCAGTGCTGACAGTGAGCTTGAGGACGCTGTTGTGGAAGTGATTGACCATCATCTCCTACAGAGACCCTCCTCCTCCTGCCCCATCACTGTGGAGCCTGTGGGCTCCTGCACAACCCTGGTGACTGAGCGCATTGCCCAGAAGTCACCCGCAGTGCTCGACCAACAAGTGGCTCAGCTTTTATACGGTACCATCATCCTGGACTGTGTTAACATGGCACCTGAAGCAGGTAAAGTCACCCCGAAGGACAGCCAGTACGCCATCTTTTTGGAGCAGCGTTTCCCAAAACTGCCTCCGCGGGGCGCTCTGTTTCAGTCTCTGCAGAATGCCAAGTTTGACGTGTCAGGCCTGTCCACAGAGCAGATGCTGCTGAAAGACATGAAAGCAGCGTCTGGTGGCGATCTGAGATTGGCTGTCAGTGTTATTTACATGACACTAGAGGATTTTCTTCAGAGAAGTGGCCTACAGCAGGACCTTTGCGAGTTCTGCCACAGTCACAACTATAATCTGCTGCTGGCCATGACAATCTCTTTTAAAGACAGCAAGGAGCCCTTCAGACAGCTGGCCGTCTACAGCTCCAGCACCGTCTACAGGGAAGAGATGAGTAAAGCACTAGAAAAAGCCAAAAACCCCAGTCTGGAGCTTAAGCCATTAAGCAGTCCATATCCAGATGTGAAGGCCTTTATTCAGGGTAACACACTGGCGTCTCGCAAAAAGGTGATGCCTATAATCACAGACTTCCTAAAGGAGAAGGAAAGGAGAGAAGCTCAGTGTATGAACATGGAGGATCTGGACCTGGACGATGATTCAAACCAGGACCAGAGTGACTGTCTGGAGGACGCTGGGATTGAGGACGACACTCGGGTTCCTCCAACGCCAATGAACAGTCTGGTGGAGGGCTGTCCCTTAGACAACGGCCTTCCCAAAATCAGCCCTGAAGCCTTGGTGGAGAAAGTCAGCAAGATGGCAAGCATGGAGGACACATCTCCTGAGGAGCAGTGATGAAGATGTGAATCTGGAGTAAGAGAAGGAAGCTCCTTCTGTGTCTTCATATACAGCAGTGGTGCATCAGGGAAATGGCACTGTTTTTAGATCTGGTGAACTCATAAAAGGTACGAGACTGTCTCCAAAGACCTTACTTTTGACCTTCTATTGACTGGTACGTGATGATTCAAACGGAGCATTACTTAGTTGCATCTCGTATAAGACAAGGTTTGGATTTGATAAAAGTAATTCCTATGGCATCTACAATTTGAACTTAATCTTATCTTAAATACTGCAGATAAGATGCACTCAATGCAAGCTAGCGACTGACAATTAATAGTACAAACGGATATGGATTATGAAAATATTCCACTAGTATGCAGTATGCACGTAATTATAACGTGGTAGCTATTTTTATTGTTGTAgcctgtaaaaaaacaaaaagatctgttaattaactgtttcttgtattttgtgattcgtgTTTTCGGATTTGCGTTATGGAGCATTGATTTCTACTACATAAACTTTTGATCGTGAaaattttgtttgaaaaaaatgactttcatttgatattttttgcggtggccgagagagcttagcGTGCTGCAATTTaggaaagcacatgcaattacaaaaaacaccagca

Function

GO:

id name namespace
GO:0006798 polyphosphate catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016462 pyrophosphatase activity molecular_function
GO:0004309 exopolyphosphatase activity molecular_function

KEGG:

id description
ko00230 Purine metabolism

ZFIN:

id description
ZDB-GENE-100609-1 Predicted to enable exopolyphosphatase activity. Predicted to be involved in polyphosphate catabolic process. Predicted to be active in cytoplasm. Orthologous to human PRUNE1 (prune exopolyphosphatase 1).

Ensembl:

ensembl_id ENSDART00000111081

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021738 lncRNA upstream 526390 37713264 ~ 37713637 (+) True XLOC_010118
TCONS_00021997 lncRNA upstream 579416 37659520 ~ 37660611 (+) True XLOC_010117
TCONS_00021996 lncRNA upstream 598164 37633447 ~ 37641863 (+) True XLOC_010116
TCONS_00020081 lncRNA upstream 636958 37582951 ~ 37603069 (+) True XLOC_010115
TCONS_00021995 lncRNA upstream 1281199 36955088 ~ 36958828 (+) True XLOC_010114
TCONS_00021739 lncRNA downstream 464902 38731787 ~ 38733942 (+) True XLOC_010134
TCONS_00021998 lncRNA downstream 1357239 39624124 ~ 39627370 (+) True XLOC_010142
TCONS_00021999 lncRNA downstream 1360828 39627713 ~ 39628196 (+) True XLOC_010143
TCONS_00022000 lncRNA downstream 1364725 39631610 ~ 39632068 (+) True XLOC_010144
TCONS_00022001 lncRNA downstream 1590300 39857185 ~ 39901940 (+) False XLOC_010145
TCONS_00020093 mRNA upstream 1118 38201840 ~ 38238909 (+) True XLOC_010126
TCONS_00020091 mRNA upstream 39504 38167193 ~ 38200523 (+) False XLOC_010125
TCONS_00020089 mRNA upstream 40267 38159758 ~ 38199760 (+) False XLOC_010125
TCONS_00020090 mRNA upstream 41221 38159857 ~ 38198806 (+) False XLOC_010125
TCONS_00020092 mRNA upstream 52758 38167883 ~ 38187269 (+) True XLOC_010125
TCONS_00020096 mRNA downstream 10454 38277339 ~ 38298199 (+) False XLOC_010128
TCONS_00020098 mRNA downstream 70898 38337783 ~ 38347556 (+) False XLOC_010129
TCONS_00020099 mRNA downstream 71836 38338721 ~ 38347157 (+) False XLOC_010129
TCONS_00020100 mRNA downstream 71840 38338725 ~ 38343083 (+) True XLOC_010129
TCONS_00020101 mRNA downstream 83819 38350704 ~ 38355340 (+) False XLOC_010130
TCONS_00020086 other upstream 218893 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020082 other upstream 468427 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020072 other upstream 1490703 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020068 other upstream 1655242 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020056 other upstream 2513895 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020097 other downstream 29116 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020102 other downstream 83838 38350723 ~ 38352278 (+) False XLOC_010130
TCONS_00020107 other downstream 127528 38394413 ~ 38396795 (+) True XLOC_010132
TCONS_00020117 other downstream 880117 39147002 ~ 39158182 (+) False XLOC_010137
TCONS_00020126 other downstream 1744984 40011869 ~ 40011991 (+) True XLOC_010148

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_02406070_02411794.mRNA True 1829 mRNA 0.46 7 CI01000016 2406070 ~ 2412306 (+)