RNA id: TCONS_00020096


Basic Information

Item Value
RNA id TCONS_00020096
length 1400
RNA type mRNA
GC content 0.48
exon number 10
gene id XLOC_010128
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38277339 ~ 38299644 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacacaacacgcaAGAGAAGAGTCTGCCAGTGAAACAGCTCAGGTCATGGTCAGCGCTTCACTTCAATTAATGCTTTTCTGATTCACACACTTTCTGCCATGGGGACTTACTCAGACCAGAGGGAAGCGTACATGCAAAATGGGCACACTGAAAACAGCAGGACATCAGACTTCATCCCTGATATGGAACTCCGGGAGGAATGGCAGGATGAGGAGTTTCCAAGACCACTTCCAGAGGACACACATAGTCCTGGTGATGAAGAGGAAAGTGCTGGAGCAGAGGGGAAAAAGCCTGTCCCTCCCACCAGCCTGGCCCTTACGGGTAATACAGTCAGAAAGAAGCGACTAGTGGCACCGACTCTGAGTCTAACACTGGATAAAACCTCTACTGACCGGAGCCTGAAATCGGATGAGTTTGAAGCTTCTGCCCTTTCACCGTCTCCTGATGACGACCTAGACATGGACATTAACCTGGAGGCCTTAGAAACGCCCTCAGATAGCGAGTCCTACAACTTTCCAGAAAGCATGCATGACTTGGAATGGGAAGATGATCTTCCACGCATGGGTAAAGCATCGATCAGAAAACCCAGTTTATTAGAGCACGCAGAGATGGGACACTTGGAGTTGGATCAAGTAGACGATTATGGCCGACGATGGAGGCATTTCCATATTGGCGGACAAGACTATCAAGTCAACATGAGTGTTTTGGAGCCATACCTCCAAGTACTCTCACACGGAGGGTACTATGGAGACGGATCGACGGCCATCATCATGTTTACCTCCTGCTACCTTCCagaaaacacaacagaacactATGAGTATGTGATGGACAACCTGTTCAGGTACATCATTGGCACACTGGACTTGATGGTGTCTGAGAATTACATTTTGGTGTATCTGTGTGGAATGGCTCCTCGCAATAAGATGCCTGGCATTAAGTGGCTGCGACAGTGTTACATGTCCATTGACAGAAGGTTAAGGAAAGATCTGAAAGGGCTGTTTGTGGTTCATCCGGCCTGGTATGTTAGAGCGCTCATCACTGTCATCAAACCCTTCATCAGTGAGAAGTTCAGCAGGAAGATGCGCTTCATCCACAGCCTGCAGGAACTGGCAGAGTTTGTTCCTGTGGAGCAGCTGCAAATCCCAGACTGCATCAGAGAGTATGATACGCAGCTGAACAGGTGAAGGTGTTGCTGATGGAGCGAGATCGCTGGTGTTTATACTGTACAGGTCACATACATGTGGGATTCAGAACAGCCTGAGGTCAATGGTCAAAGCTTTAGGGCAAATGACAGAAACACAGTTTCCTAACAGACAGCACTCTTTGAGGAAATACAAAACAGCCAGTGTTGTCCTTCAGAGAGCTGTGTGCAGCTGTGTGTGTCAGGAGAGATCTCAAG

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006798 polyphosphate catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004309 exopolyphosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-81 Predicted to enable exopolyphosphatase activity. Predicted to be involved in apoptotic process and polyphosphate catabolic process. Predicted to be active in cytoplasm. Orthologous to human BNIPL (BCL2 interacting protein like).

Ensembl:

ensembl_id ENSDART00000085143

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020095 lncRNA upstream 25239 38240045 ~ 38252100 (+) True XLOC_010127
TCONS_00021738 lncRNA upstream 563702 37713264 ~ 37713637 (+) True XLOC_010118
TCONS_00021997 lncRNA upstream 616728 37659520 ~ 37660611 (+) True XLOC_010117
TCONS_00021996 lncRNA upstream 635476 37633447 ~ 37641863 (+) True XLOC_010116
TCONS_00020081 lncRNA upstream 674270 37582951 ~ 37603069 (+) True XLOC_010115
TCONS_00021739 lncRNA downstream 433588 38731787 ~ 38733942 (+) True XLOC_010134
TCONS_00021998 lncRNA downstream 1325925 39624124 ~ 39627370 (+) True XLOC_010142
TCONS_00021999 lncRNA downstream 1329514 39627713 ~ 39628196 (+) True XLOC_010143
TCONS_00022000 lncRNA downstream 1333411 39631610 ~ 39632068 (+) True XLOC_010144
TCONS_00022001 lncRNA downstream 1558986 39857185 ~ 39901940 (+) False XLOC_010145
TCONS_00020094 mRNA upstream 10454 38240027 ~ 38266885 (+) False XLOC_010127
TCONS_00020093 mRNA upstream 38430 38201840 ~ 38238909 (+) True XLOC_010126
TCONS_00020091 mRNA upstream 76816 38167193 ~ 38200523 (+) False XLOC_010125
TCONS_00020089 mRNA upstream 77579 38159758 ~ 38199760 (+) False XLOC_010125
TCONS_00020098 mRNA downstream 39584 38337783 ~ 38347556 (+) False XLOC_010129
TCONS_00020099 mRNA downstream 40522 38338721 ~ 38347157 (+) False XLOC_010129
TCONS_00020100 mRNA downstream 40526 38338725 ~ 38343083 (+) True XLOC_010129
TCONS_00020101 mRNA downstream 52505 38350704 ~ 38355340 (+) False XLOC_010130
TCONS_00020103 mRNA downstream 52854 38351053 ~ 38359637 (+) True XLOC_010130
TCONS_00020086 other upstream 256205 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020082 other upstream 505739 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020072 other upstream 1528015 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020068 other upstream 1692554 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020056 other upstream 2551207 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020102 other downstream 52524 38350723 ~ 38352278 (+) False XLOC_010130
TCONS_00020107 other downstream 96214 38394413 ~ 38396795 (+) True XLOC_010132
TCONS_00020117 other downstream 848803 39147002 ~ 39158182 (+) False XLOC_010137
TCONS_00020126 other downstream 1713670 40011869 ~ 40011991 (+) True XLOC_010148
TCONS_00020136 other downstream 1885544 40183743 ~ 40183859 (+) True XLOC_010154

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_02415346_02420145.mRNA True 875 mRNA 0.50 7 CI01000016 2415346 ~ 2420145 (+)