Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00020099 |
| length | 1363 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 8 |
| gene id | XLOC_010129 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 38337783 ~ 38347556 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050208-136 | Predicted to enable transcription cis-regulatory region binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human GABPB2 (GA binding protein transcription factor subunit beta 2). |
| ensembl_id | ENSDART00000076528 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00020095 | lncRNA | upstream | 86621 | 38240045 ~ 38252100 (+) | True | XLOC_010127 |
| TCONS_00021738 | lncRNA | upstream | 625084 | 37713264 ~ 37713637 (+) | True | XLOC_010118 |
| TCONS_00021997 | lncRNA | upstream | 678110 | 37659520 ~ 37660611 (+) | True | XLOC_010117 |
| TCONS_00021996 | lncRNA | upstream | 696858 | 37633447 ~ 37641863 (+) | True | XLOC_010116 |
| TCONS_00020081 | lncRNA | upstream | 735652 | 37582951 ~ 37603069 (+) | True | XLOC_010115 |
| TCONS_00021739 | lncRNA | downstream | 384630 | 38731787 ~ 38733942 (+) | True | XLOC_010134 |
| TCONS_00021998 | lncRNA | downstream | 1276967 | 39624124 ~ 39627370 (+) | True | XLOC_010142 |
| TCONS_00021999 | lncRNA | downstream | 1280556 | 39627713 ~ 39628196 (+) | True | XLOC_010143 |
| TCONS_00022000 | lncRNA | downstream | 1284453 | 39631610 ~ 39632068 (+) | True | XLOC_010144 |
| TCONS_00022001 | lncRNA | downstream | 1510028 | 39857185 ~ 39901940 (+) | False | XLOC_010145 |
| TCONS_00020096 | mRNA | upstream | 40522 | 38277339 ~ 38298199 (+) | False | XLOC_010128 |
| TCONS_00020094 | mRNA | upstream | 71836 | 38240027 ~ 38266885 (+) | False | XLOC_010127 |
| TCONS_00020093 | mRNA | upstream | 99812 | 38201840 ~ 38238909 (+) | True | XLOC_010126 |
| TCONS_00020091 | mRNA | upstream | 138198 | 38167193 ~ 38200523 (+) | False | XLOC_010125 |
| TCONS_00020101 | mRNA | downstream | 3547 | 38350704 ~ 38355340 (+) | False | XLOC_010130 |
| TCONS_00020103 | mRNA | downstream | 3896 | 38351053 ~ 38359637 (+) | True | XLOC_010130 |
| TCONS_00020104 | mRNA | downstream | 12845 | 38360002 ~ 38389880 (+) | False | XLOC_010131 |
| TCONS_00020105 | mRNA | downstream | 12849 | 38360006 ~ 38389883 (+) | True | XLOC_010131 |
| TCONS_00020106 | mRNA | downstream | 47214 | 38394371 ~ 38397359 (+) | False | XLOC_010132 |
| TCONS_00020097 | other | upstream | 39077 | 38296001 ~ 38299644 (+) | True | XLOC_010128 |
| TCONS_00020086 | other | upstream | 317587 | 38021019 ~ 38021134 (+) | True | XLOC_010122 |
| TCONS_00020082 | other | upstream | 567121 | 37771483 ~ 37771600 (+) | True | XLOC_010119 |
| TCONS_00020072 | other | upstream | 1589397 | 36748606 ~ 36749324 (+) | False | XLOC_010112 |
| TCONS_00020068 | other | upstream | 1753936 | 36582486 ~ 36584785 (+) | False | XLOC_010109 |
| TCONS_00020102 | other | downstream | 3566 | 38350723 ~ 38352278 (+) | False | XLOC_010130 |
| TCONS_00020107 | other | downstream | 47256 | 38394413 ~ 38396795 (+) | True | XLOC_010132 |
| TCONS_00020117 | other | downstream | 799845 | 39147002 ~ 39158182 (+) | False | XLOC_010137 |
| TCONS_00020126 | other | downstream | 1664712 | 40011869 ~ 40011991 (+) | True | XLOC_010148 |
| TCONS_00020136 | other | downstream | 1836586 | 40183743 ~ 40183859 (+) | True | XLOC_010154 |
