RNA id: TCONS_00020107


Basic Information

Item Value
RNA id TCONS_00020107
length 807
RNA type processed_transcript
GC content 0.44
exon number 3
gene id XLOC_010132
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38394371 ~ 38397359 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGAATTGATCGTATGTCTAGTAACTTTAGTTGTGGCGGAGGATCAGCTGCCGGAGATTCGCGCCATCGCCGGGGAAGACGCGGTGCTGCGCTGCTCGGCGAAGTCAGAGACCGGCGTCCAGTATCGCTCGGTCATATGGTATAAGGTTGATGAAGCAGAGCCTTCCCAGCAGTTAACTGGCCTTGTGAGGAAACGGCTCACTGAAGATGATGGGAAAGTGGAGAAATATAACGGTGTCGAGCGAGAAGTGGTACTACTGGAGGACTCAAAGAATCTTATTCTGTCTAATGTAACAGCAGAAGACAGTGGGATATACAGATGCTTTCTGTCTGCTCCGCTTGGCTATCAGAACCAGCGAGGCGATATCATTCTGACAGTCTACAGTAAGTACTTTTCTTAACACCAAAAGTATTTAAACACAATTCACATTGAAAAAGACAACTTTTAAAAATCAAACTCAAGTTGACTAGTGTGCCAGCACATTATGTAAAGTTATTAATCTAAGTCAGGGGTcagcaaacttgttcctggagggccagtgttcagCAGATTTTGGCTCcatctctaatcaaacacacctgaacaagctaatcaaggtcttactaggtatacttgaaacatccaggcaggtgtgttgatgctagttggagctaaaccctgtagAGACACCGGCCTTCTAGGACAGAGATTGGTGTCCCCTgctgtaatattcattaatatttaagGGTAGTTTTAAAGACCTCTGAATACTTGTACTATGAGGACTAGGCAATGAACGTGACTGACAAATTAACAATCTCATGTTG

Function

GO:

id name namespace
GO:0002286 T cell activation involved in immune response biological_process
GO:0002468 dendritic cell antigen processing and presentation biological_process
GO:0009986 cell surface cellular_component
GO:0071753 IgM immunoglobulin complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-060503-762 Acts upstream of or within T cell activation involved in immune response and dendritic cell antigen processing and presentation. Located in cell surface. Part of IgM immunoglobulin complex. Is expressed in several structures, including digestive system; gill; heart; immune system; and integument. Orthologous to human CD83 (CD83 molecule).

Ensembl:

ensembl_id ENSDART00000137623

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020095 lncRNA upstream 142313 38240045 ~ 38252100 (+) True XLOC_010127
TCONS_00021738 lncRNA upstream 680776 37713264 ~ 37713637 (+) True XLOC_010118
TCONS_00021997 lncRNA upstream 733802 37659520 ~ 37660611 (+) True XLOC_010117
TCONS_00021996 lncRNA upstream 752550 37633447 ~ 37641863 (+) True XLOC_010116
TCONS_00020081 lncRNA upstream 791344 37582951 ~ 37603069 (+) True XLOC_010115
TCONS_00021739 lncRNA downstream 334992 38731787 ~ 38733942 (+) True XLOC_010134
TCONS_00021998 lncRNA downstream 1227329 39624124 ~ 39627370 (+) True XLOC_010142
TCONS_00021999 lncRNA downstream 1230918 39627713 ~ 39628196 (+) True XLOC_010143
TCONS_00022000 lncRNA downstream 1234815 39631610 ~ 39632068 (+) True XLOC_010144
TCONS_00022001 lncRNA downstream 1460390 39857185 ~ 39901940 (+) False XLOC_010145
TCONS_00020105 mRNA upstream 4530 38360006 ~ 38389883 (+) True XLOC_010131
TCONS_00020104 mRNA upstream 4533 38360002 ~ 38389880 (+) False XLOC_010131
TCONS_00020103 mRNA upstream 34776 38351053 ~ 38359637 (+) True XLOC_010130
TCONS_00020101 mRNA upstream 39073 38350704 ~ 38355340 (+) False XLOC_010130
TCONS_00020098 mRNA upstream 46857 38337783 ~ 38347556 (+) False XLOC_010129
TCONS_00020108 mRNA downstream 262680 38659475 ~ 38729606 (+) True XLOC_010133
TCONS_00020109 mRNA downstream 422069 38818864 ~ 38825024 (+) False XLOC_010135
TCONS_00020110 mRNA downstream 423691 38820486 ~ 38825079 (+) False XLOC_010135
TCONS_00020111 mRNA downstream 423865 38820660 ~ 38825024 (+) False XLOC_010135
TCONS_00020112 mRNA downstream 423865 38820660 ~ 38826777 (+) True XLOC_010135
TCONS_00020102 other upstream 42135 38350723 ~ 38352278 (+) False XLOC_010130
TCONS_00020097 other upstream 94769 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020086 other upstream 373279 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020082 other upstream 622813 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020072 other upstream 1645089 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020117 other downstream 750207 39147002 ~ 39158182 (+) False XLOC_010137
TCONS_00020126 other downstream 1615074 40011869 ~ 40011991 (+) True XLOC_010148
TCONS_00020136 other downstream 1786948 40183743 ~ 40183859 (+) True XLOC_010154
TCONS_00020139 other downstream 1905996 40302791 ~ 40320230 (+) True XLOC_010153
TCONS_00020142 other downstream 1949652 40346447 ~ 40347376 (+) False XLOC_010157

Expression Profile

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