RNA id: TCONS_00020113


Basic Information

Item Value
RNA id TCONS_00020113
length 504
RNA type mRNA
GC content 0.43
exon number 5
gene id XLOC_010136
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38940758 ~ 38943685 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAACAGCAGAGAGAAAAGCGCTTACACGCCGATGAGAACATTATGCTCATATTCATTAGTGTCTGACTAATATGAGTAAAGAATCACAAATGAGGGCCGCCATTAACCAGAAGTTAATTGAGATGGGTGAGAGGGAGAGgtTAAAGGAGTTGCTTCGAGCCAAGCTCATCGAGTGTGGTTGGAGAGATCAACTCAAAGCACTCTGCAAAGAGGTGATCAAGGAGAAAGGTATAGAAAATGTTACCGTGGAAGACTTGGTTGCTGGAGTTACTCCCAAAGGAAGAGCCCTGGTGCCTGACAGTGTAAAGAAGGAGCTGCTTCAGAGAATAAGAGCCTTTCTCGCACAGCACTCTACATGATGCGCAGTATTTCTGAAAGCGTCTGTCATTTTTGTATTGACATTATGCCAATAGCAATGCCAGAAAGTTGAACTGTTTTGTGGTGTGATTTCACTCTTCGTCTTTTTGTTACTCCCAATAAAGGTTGATCATGTTTGTACATAA

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006368 transcription elongation from RNA polymerase II promoter biological_process
GO:0006406 mRNA export from nucleus biological_process
GO:0015031 protein transport biological_process
GO:0016578 histone deubiquitination biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0051028 mRNA transport biological_process
GO:0016973 poly(A)+ mRNA export from nucleus biological_process
GO:0071819 DUBm complex cellular_component
GO:0000124 SAGA complex cellular_component
GO:0005634 nucleus cellular_component
GO:0070390 transcription export complex 2 cellular_component
GO:0005643 nuclear pore cellular_component
GO:0003682 chromatin binding molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG:

id description
ko03021 Transcription machinery
ko03019 Messenger RNA biogenesis
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040718-124 Predicted to enable chromatin binding activity and transcription coactivator activity. Predicted to be involved in histone deubiquitination; poly(A)+ mRNA export from nucleus; and regulation of transcription, DNA-templated. Predicted to act upstream of or within chromatin organization; mRNA export from nucleus; and protein transport. Predicted to be located in nucleus. Predicted to be part of DUBm complex and SAGA complex. Orthologous to human ENY2 (ENY2 transcription and export complex 2 subunit).

Ensembl:

ensembl_id ENSDART00000102482

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021739 lncRNA upstream 206816 38731787 ~ 38733942 (+) True XLOC_010134
TCONS_00020095 lncRNA upstream 688658 38240045 ~ 38252100 (+) True XLOC_010127
TCONS_00021738 lncRNA upstream 1227121 37713264 ~ 37713637 (+) True XLOC_010118
TCONS_00021997 lncRNA upstream 1280147 37659520 ~ 37660611 (+) True XLOC_010117
TCONS_00021996 lncRNA upstream 1298895 37633447 ~ 37641863 (+) True XLOC_010116
TCONS_00021998 lncRNA downstream 680439 39624124 ~ 39627370 (+) True XLOC_010142
TCONS_00021999 lncRNA downstream 684028 39627713 ~ 39628196 (+) True XLOC_010143
TCONS_00022000 lncRNA downstream 687925 39631610 ~ 39632068 (+) True XLOC_010144
TCONS_00022001 lncRNA downstream 913500 39857185 ~ 39901940 (+) False XLOC_010145
TCONS_00020124 lncRNA downstream 914987 39858672 ~ 39901940 (+) False XLOC_010145
TCONS_00020112 mRNA upstream 113981 38820660 ~ 38826777 (+) True XLOC_010135
TCONS_00020110 mRNA upstream 115679 38820486 ~ 38825079 (+) False XLOC_010135
TCONS_00020109 mRNA upstream 115734 38818864 ~ 38825024 (+) False XLOC_010135
TCONS_00020111 mRNA upstream 115734 38820660 ~ 38825024 (+) False XLOC_010135
TCONS_00020108 mRNA upstream 211152 38659475 ~ 38729606 (+) True XLOC_010133
TCONS_00020115 mRNA downstream 203011 39146696 ~ 39168840 (+) False XLOC_010137
TCONS_00020116 mRNA downstream 203124 39146809 ~ 39167500 (+) False XLOC_010137
TCONS_00020118 mRNA downstream 216067 39159752 ~ 39168840 (+) True XLOC_010137
TCONS_00020119 mRNA downstream 253042 39196727 ~ 39233451 (+) True XLOC_010138
TCONS_00020120 mRNA downstream 298654 39242339 ~ 39246079 (+) True XLOC_010139
TCONS_00020107 other upstream 543963 38394413 ~ 38396795 (+) True XLOC_010132
TCONS_00020102 other upstream 588480 38350723 ~ 38352278 (+) False XLOC_010130
TCONS_00020097 other upstream 641114 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020086 other upstream 919624 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020082 other upstream 1169158 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020117 other downstream 203317 39147002 ~ 39158182 (+) False XLOC_010137
TCONS_00020126 other downstream 1068184 40011869 ~ 40011991 (+) True XLOC_010148
TCONS_00020136 other downstream 1240058 40183743 ~ 40183859 (+) True XLOC_010154
TCONS_00020139 other downstream 1359106 40302791 ~ 40320230 (+) True XLOC_010153
TCONS_00020142 other downstream 1402762 40346447 ~ 40347376 (+) False XLOC_010157

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU106367 False 1188 lncRNA 0.40 6 CI01000016 1340452 ~ 1342798 (+)
mexican tetra (Astyanax mexicanus) TU106367 True 435 lncRNA 0.37 2 NC_035905.1 8150455 ~ 8151276 (-)