RNA id: TCONS_00020116


Basic Information

Item Value
RNA id TCONS_00020116
length 2845
RNA type mRNA
GC content 0.48
exon number 9
gene id XLOC_010137
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 39146696 ~ 39168840 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCAGATTTGCGTTGTCCTGGCGATGTCAGTGTCCTCAGCCTCTTCTGCTcgagcacaaacaaacacagacacacacactgatgctgTGCTGAATAATCTAGCAGACAGAGGCTGAAAGTCCTTCACATCGCATCAAAACAGCCAACAGCAGCAGAGCGGCGAGAGCGCGCATTGTGTTGTTTTGAGGAGCCACGGGGCCGCGCATCCTTCACTTTCTCTCATTCACTCGCAGGAATCAGCAGCGCATCACCAGgcGGGGCAGAGGCGTCAGTGCACAGTTGTCAACAAGCTGAACGTCTGTCAGTCAGGTTTATTGAATTACCTCCTATTTAAGAAGAATGGGACCTTTACAGACGTACGAGGTGAAAGAGAAGAGAAACATGCGCAGCCGGATTCCAAGATTTGTCCTCCACCCTCTGCGTACAAAAGAAAAGGAGTTATCAGTGTCCAACATGCCACTTTCAGAAGAGGAGAGCAAGGATTTCGACATCAGCTCCCAGCACTCCAAAAGAACCATCAGTCCAAACAGCCTGTCCTCAGATGATACTGGATGCCCAAGCAGTCAATGTGCATCTCCAAGCAAGACTCCCTCCGGCTCTGACAACAGTTCACTGGCTTCTCCTGGACTGGGAGAGCGAAAGGTGAAGAGAGTGAGGATGAATGTGGAGGCCGAGTGGAGCGCACCGACACAGAAGCACAAGAGAGAAGAGCAGCAGCGCACATCCATCATGCATAAAGGCAGTGAGACAGATTTCAGCTCATCAAGCAGCGCTGGAAGCTACAAGACCCGAGAAACTCAGCTCAGCAACTCTGCGGGGAAGAACTTATCTTCTCGAAGCCGTGGGCCCCACATCAGGAGCCTGCCTGTGTTCAAGCCCGCAGGAAGCCCCTCCGCTCCTCGTGATGCAGAGCTTTACGCCCCAATCAGGACGCCCCCAAAAACACCCTCCTTTACCAACAGCAGCAGCTGCAGCAACTCCAGCTCTAGCAGAAGaaggACTGCTCCTGTTCGTTATCATTCCTGTGGAGACAATCATGGCATCAAGCCTCCCAATCCCGAGCAGTACCTTACTCCACTACAGCAGAAAGAAGTGGCCATTCGACACCTCAAGACCAAGCTCAGAGACTCAGAGAACACCGTTTGTGATCGGGAGTCTGAGATTGAGGAACTGAAATCTCAACTGGGACGTATGAGGGAGGACTGGATAGAGGAGGAATGTCACCGTGTTGAAGCTCAGCTGGCTCTTAAAGAAGCCCGCAAAGAGATCAAACAGCTGCGCCAAGTGGTGGAAACCATGAAGAACAGCCTGATGGAGAAGGACAAAGGCATACAGAAGTACTTCattgatataaacatccaaaaccGGAAGCTGGAGTCCTTGCTCCACAGCATGGAGTTGGCGCAAAATGGATGCAACTTGCAAGATGAGCCGACGCTGGATTTTATCTGCGAGGCTCCAGAAAGTTCTACCGAGGCGAAGATGGAGCTGGAGCTACATTGTGGGGAGCAAGCAGTGGAAGAAATGGCGAATAGTGAGCTGCTCATCAATGATGAGATGGTCAACAGAGTAGAGATTCTCATGTCAACCGCAGTCGATTCCAGCCAAGATGGAAGCACCAAGATCATCTCCCAACCAGGACTGTCCTGCTTGGAGCCGAGTGTTTCAGAAAAGAGCACCAAAGAGCATGTCTCAAGCATTCCAATTGGTGCAGAAGATAAAGGTATTCAGACTGATGATGTGATCTACAGCACTGATCTCCAAACGCTGCTTTACCAACTGCTAAAGCTCCAGGGTGGGGGATTTCCAGGCCTCCTCGTTCCTTCTCCCAACCAATCCCATGATATCTCTTCAGCACAGGCTCCCAAAAAGTCACAAAAGGAGGAGTTACCTGAAGCACACGAGCAAGATGTTGCCATCAGCACTGCCCAAATTGTTCCCAGTGATTCTGGTTTGGGTTTTTCCGAGCCTGAAGTGGGTCCAGAGTTTATGGAGGAGATGAATTCGAAGAACAAGGCAGTGGTTGGGAAGAACCACTGGAGCAACAACTTCTTTGTGGATTTGGTTGCTGTTGCTGCACCCGTCCTGCCCACCGTGGCTTGGCTTTATTCGCAGCACGGTTTGGTGGGAGGGGCTCCGGTCTACAACATAGCTTCATTGATTCGAGGCTGTTGTGTTATGGGATTGCACTCGCTCCGCCATGTGTCTCACGGGCCGGACACTTAGCGGCCCTCACCTACTTCTACAACAAGAGCACTTAAATCTTCATCTTCAAGTATAAATCGTGTTTTGTACACTCGTGATTTGATATGCATAGTTTCTGTTTAGCTGCATCATTCctatttgcactgtatttttgcCACAAAGGATGACTTCAAGGGGATATCAAGGGActtgttttgtcttttatttctgttatttattgaccttttcgtttgtttatttataaatatttttgcatAATCTGATCATCTTGGTAGGTGGTTATGTTGCTCGAGTCTTATTTGCTGACTGCGATTCCCTGCTTTTTATAAAAGAGTCAATAGGGGTTGACTGTCAGTTAGTtgcgacttttttttttgttgttgttgttgttgtatagtTAAAGCATCACTAGTGTTCCAAAAGAACTGAAACCTTCTGCCAAAGCTTCAATGTGTTCAGCGTTTTGTGTTAAGTGAAACTGTGTTTCTCTCCTTTGGAGTTTAGAGCTATTATGTGTTTCCTGAAAAGCAACACTTGCCACAGTACAGCGAACACTTGTTATGTGCCTGAGCTATGTgcaatatttttgttaatatgatatgtatatcattatatttattattaaagcatGGAAAACCCC

Function

GO:

id name namespace
GO:0060074 synapse maturation biological_process
GO:0048263 determination of dorsal identity biological_process
GO:0019896 axonal transport of mitochondrion biological_process
GO:2000053 regulation of Wnt signaling pathway involved in dorsal/ventral axis specification biological_process
GO:0060828 regulation of canonical Wnt signaling pathway biological_process
GO:0005881 cytoplasmic microtubule cellular_component
GO:0031982 vesicle cellular_component
GO:0005515 protein binding molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0019894 kinesin binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-1202 Predicted to enable kinesin binding activity and syntaxin-1 binding activity. Acts upstream of or within determination of dorsal identity; regulation of Wnt signaling pathway involved in dorsal/ventral axis specification; and regulation of canonical Wnt signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasmic microtubule and vesicle. Is expressed in blastomere; oocyte stage I; unfertilized egg; and yolk. Orthologous to human SYBU (syntabulin).

Ensembl:

ensembl_id ENSDART00000084381

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021739 lncRNA upstream 412867 38731787 ~ 38733942 (+) True XLOC_010134
TCONS_00020095 lncRNA upstream 894709 38240045 ~ 38252100 (+) True XLOC_010127
TCONS_00021738 lncRNA upstream 1433172 37713264 ~ 37713637 (+) True XLOC_010118
TCONS_00021997 lncRNA upstream 1486198 37659520 ~ 37660611 (+) True XLOC_010117
TCONS_00021996 lncRNA upstream 1504946 37633447 ~ 37641863 (+) True XLOC_010116
TCONS_00021998 lncRNA downstream 456624 39624124 ~ 39627370 (+) True XLOC_010142
TCONS_00021999 lncRNA downstream 460213 39627713 ~ 39628196 (+) True XLOC_010143
TCONS_00022000 lncRNA downstream 464110 39631610 ~ 39632068 (+) True XLOC_010144
TCONS_00022001 lncRNA downstream 689685 39857185 ~ 39901940 (+) False XLOC_010145
TCONS_00020124 lncRNA downstream 691172 39858672 ~ 39901940 (+) False XLOC_010145
TCONS_00020113 mRNA upstream 203124 38940758 ~ 38943685 (+) False XLOC_010136
TCONS_00020114 mRNA upstream 203128 38940786 ~ 38943681 (+) True XLOC_010136
TCONS_00020112 mRNA upstream 320032 38820660 ~ 38826777 (+) True XLOC_010135
TCONS_00020110 mRNA upstream 321730 38820486 ~ 38825079 (+) False XLOC_010135
TCONS_00020109 mRNA upstream 321785 38818864 ~ 38825024 (+) False XLOC_010135
TCONS_00020119 mRNA downstream 29227 39196727 ~ 39233451 (+) True XLOC_010138
TCONS_00020120 mRNA downstream 74839 39242339 ~ 39246079 (+) True XLOC_010139
TCONS_00020121 mRNA downstream 103623 39271123 ~ 39386073 (+) False XLOC_010140
TCONS_00020122 mRNA downstream 103750 39271250 ~ 39382568 (+) True XLOC_010140
TCONS_00020123 mRNA downstream 318108 39485608 ~ 39583668 (+) True XLOC_010141
TCONS_00020107 other upstream 750014 38394413 ~ 38396795 (+) True XLOC_010132
TCONS_00020102 other upstream 794531 38350723 ~ 38352278 (+) False XLOC_010130
TCONS_00020097 other upstream 847165 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020086 other upstream 1125675 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020082 other upstream 1375209 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020126 other downstream 844369 40011869 ~ 40011991 (+) True XLOC_010148
TCONS_00020136 other downstream 1016243 40183743 ~ 40183859 (+) True XLOC_010154
TCONS_00020139 other downstream 1135291 40302791 ~ 40320230 (+) True XLOC_010153
TCONS_00020142 other downstream 1178947 40346447 ~ 40347376 (+) False XLOC_010157
TCONS_00020144 other downstream 1179095 40346595 ~ 40348954 (+) True XLOC_010157

Expression Profile

//