RNA id: TCONS_00020121


Basic Information

Item Value
RNA id TCONS_00020121
length 6568
RNA type mRNA
GC content 0.41
exon number 12
gene id XLOC_010140
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 39271123 ~ 39386073 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATCGTCTCCACATTGacgctctctctctcctctgtgaTGCTCCATTCCTGTTGGCGGAGCGCGGGAGGGAGTGACACACACTGATTccaatgcaaacacacagaaacccATTAAACAAGAGTCCGAGGCAGAAAGCAGCGAGAGAAGAATGAAAGTAGTCTCCATTCACCTCCTCTCCACGCGATGACAATTTCCAGCAGTATTTACAGCTTGCTTTTAAAACTCGTCTTTGAATACTGAATCGTCACGCTGCAGGCTCCGGAGTTTTGGGATAATCATGGAAAAAATAGTGAACGTGTCGCATTCGGGGGGCAATAAAGGAAAGTCCGCGGATCTGGGGAATCCCGCGCAGAGGCAGAGCAGAAGCGGCTCGTACAGTCCGGGATCAGCCGCTGTTTCGGACACTCATCCGTCTCAGAGCCAGAAGAGACACTTGGAGGGGGTTTTGAACAAATACACCAATTTACTACAAGGCTGGCAGAACAGATATTTTGTGTTGGACCCAGAGCTCGGGCAGCTTCAGTATTTCATCAATGAGCACAGTAAGGTCCAGAAGCCACGAGGATCTTTGCCCCTCATTGGCTCCTCAGTGGCCCCGAGTGATGAGTTTCCCTTCATGTTCACAGTCTGTGCCGCGAATGGAGATTTCTTCAAACTGCGAGCCAGCGATGTGCGCGAGCAGCAGATGTGGATGACCCAGCTTCAGCTCTGTGCCCGTCGCCACTCAGACGGCAATGCCAAGGgctgctcctcctcttcctcctcctccactTCATCCACCGGCCGGACCCGCAGCTTCTCCCTGCACCCGCACCCCGTTCCGCAGAACTCCTTCATCTCCGCTCAGAAACAGAGCCCCCAGCATGGGACGCCTGCCTCCGTCATCAGCATCACCCACCACAGGTCCCCCACCGGCGGCCAGAGGGCCTGCAGTCGAAACCCTGCTGGACTGCACCAGGTCAAAGAGGTCATGTCTCAGGCTGAGGGCCAGCAGAAGAATCTGGTGAACTCTATCGAGTCTCTGCCGAGCCGCGGGCCGCTCTCCTCGCTGGACCAGGACCTGCTGCTGCTCAAAGCCACGTCTGCTGCCACGCTCAGCTGTCTGGGAGAGTGCCTGAGTCTTCTTCAGCACAACGTCTGCCAGGCGGCTCAACACATCACCCATGGCCATCCCAACACAGGCGAGAATAACAGTTGGTCAAGGCCTAAAACAGCCTCAGAAGATCAGATGAAGAATGGAGAATTAATGTGTAACAACACATCAGCTCGACATCAGCCTCACTCCCCCATTCACAGGAGCAAAGAGCGACTCAAAGACAAGGAGAACTCCAGCCCAGAATCAGTGGACTCCAGCGAGGAGATCACAGATACAGAGGACAATGAGGAGGAAGACCTGGGTGTCCTGGATGACCAGAGGAGCGTCATTCTTCATCTGCTGTCCCAGCTCAAACTGGGCATGGACCTCACACGGGTGGTGCTGCCCACATTCATCCTAGAGAAACGCTCCCTTTTGGAGATGTACGCCAACTTCATGGCTCATCCGGATGTATTTTTGGCCATCACATCTGGAGCGACACCAGAGGAGCGCATGATCCGGTTTGTGGAATATTACTTGACCGCTTTCCATGAGGGTCGTAAAGGAGCTGTGGCCAAGAAACCTTACAACCCCATTCTGGGGGAGAGCTTCCACTGCACATGGGACGTCCCACGAGAGAAGGTCCGTCCACTCAGGACTACCAGCTCCAGCCCagctcctgctgctgctgctgctcactCGGCCCAGACCTCCTCCAATGAGGGCTTAGGGTCTTACCGGCTGCGTTTCGTGGCTGAACAGGTGTCCCACCACCCGCCAGTGTCTGGATTTTACTGCGAGTGCAAAGAGCGCCGGATATGTGTCAACACACACGTTTGGACTAAAAGCAAGTTCATGGGCATGTCCATAGGAGTGTCGATGGTCGGAGAAGgaGTGCTTCATCTGCTGGATCACGATGAGCAGTATGTGTTCACTCTGCCCTCGGCCTTCGCCCGCTCCATCCTCACTGTGCCCTGGGTGGAGCTGGGCGGTAAAGTGTCCATCAGCTGTGCCAAGAGCGGATACTCGGCCACCGTTACCTTCCACACCAAACCCTTCTATGGAGGAAAAGTGCACAGAGTGACGGCTGAGGTGAAGCACAACCCGAGTGGGACCATCGTGTGCAAGGCTCAGGGCGAGTGGAATGGGACGCTCGAGTTCACGTACAACAGCGGAGAAACCAAAGTCATCGACACCTCCAAACTGCCCGTCATCAAGAAAAAGATTCGGCCGCTTGATAAACAAGGCCAGTATGAGTCCAGgcgGCTTTGGCAGCAGGTGACAACAGCGCTGAAGGCTGGAGACATCGATGAAGCCACCGAACACAAACACCAGCTGGAGGAACGACAGAGAAGAGAAGGGAAGCAGAGATCCGCCAGCAGCAGCTCCTGGAAACCCAAATACTTCATTAAAGAGGGCGAGGGATGGGTGTATCACAATCCTCTCTGGAAGACAAAGTGAAGAGCACATCACCAGAGACACAGACTTCAGCCCGTCTCTGACCTCAGGCCGCACTGAAGGGAGTGGCCATGTAAACGAGGGGCTGGCCAGCCAACGGGACTTCAGCAATGGAGCGAGCGTGTTGTAAGGAGATTGATTGGTGCCAAAAACAACCCAAAAGCCCCTTTGGAGAATGAAGAATGTGGAGGCCTGAACTGTGTAAACCTTGTGCAATatctttatatttgtatattactGCTGAGTACAGTGCTTTTCCACACAAGAGAGATCTGTAGCATATGTATCAGAGTATATTCCACTAATGACTGCTCGATGTTGTTTTAGATTAGCTCAGAGGCAGAAGGTATTCTGAGTATTTGAGAGCAGCGAGTAAAAGAGCTGCTGTAGTACATGCTGAGTGTGTATTGATGATTTCACCACTTATCATTTTATCTGAATGGCTGAGTTGCTCTAACCATATGATGACAGTGTTGTGCTTCAGTCGAGTCTCTCGCTCCTGAAGGAAGAATAAAAATCAGTGTTTAAACGGACTGGATTTTAAAATGATtgctaatgtttttgttttttttgcccaATCATGATTTAGCGAGGTCATGCATGCATTTGaattatatttgtatgtatatatatatatatgtgtgtatatatatgtatgtatgtatatatatatatatatatatgtatgtgtgtatatatatatatatatatgtatgtgtatatatatatatatatatatgtatgtatatatatatatgtatgtgtatatatatatatatatgtatgtgtgtatatatatatatatatgtgtgtgtatatatatatatatatatatatatatatagttatagatATTTATAGTTGAAAGGCCACATTTCTGAAGATCAGCTTTTTaaagaactatatatatatatatatatatatttatacagagaatagggctgggcgattaatcgaaaaataattgaaatggaCATTCAGAGCCTATTCATTtattatccttcagcttagtccatttattcatcaggggtcaccacagcagaatgaactgccaacttatccagcatgttttacacttCCTTGTAAAGTTTTTACACTGCACTTCATTGACTGAAtggaagctgcaccagagatgccttTAAAGGGCAtttaaaacttgtcagtgaactatgaaggcaaaataaataaagaaaataatcttTTATTAATCGTAATCAAGTTTAAATATTATATGAATCGAggtttgattttaggccaaatcgcccagggAAACCAAAACTTTATCTTTCTGTGAATTGAAATTAATATTATCTATCACAAACagatttagtgtgtgtgtgtgtgtgtagcaaacattaaatttaaaagaaaaagtttgCCACAAAACaattcctaatttatttatttttctccatttaatGGTTTATAgtacaaaaaattatataataataaaaaaaatgttaaacaattaattaaatttaacattgatttcttttttttttttttttgattgctatgaaattattttaaataataaagaatcAGTTATAGGCTACAATCCATTGCGTTGCTCTGAAAGACGATCCGAAATGGTGGAAAGAgtcataaataatattacaatattatattaaccTGTTTTAAAGGGCTTTAAAAAGCACGTTTCTTCCCGCCCAATAGAAAATTTGGTATGTCCTCATGATAATCACATGACTTGAGTAATTTAATTTAGTGAAAAGTTAATTGGCATGAtgtgagtggttagcactgtcgcctcacagcaaaaaggttgctggttcaagtccagttggcatttctgtgtggatttccctcacagtccaaagacatgcgatcggggaactgaataaactaaattggccgtagtgtgtgtgtatggatgtttaccagtactgAGTTTAGAacggaaggtcatctgctgcgtaaaacatatgctggataagttggcggttcattctgctgtggcaccccctgatgaataaagggactaagacacaggaaaataaatgaataaacacctAGTGCTTAGCAAGGGAcaattaaatactttaataaCCTCAAATAGGTTATTTAATATAAGCTTTTCCATACGTTTCAGAACCATCATCAGCCTTTCCCCCCATTTCTCAGACTTCTGTGATTGAATTTTTTATGGCCATCTATAGGATTTTTCATCTATAGTAACTTTCAGATTTTTAGATAAAAGTAATCTGCTTGACCATATATGtagaattaataaattataacagCATTGCAAACTATCCTATCATACAGCCTCTAATAGCCCATATTAAATTAAATCCAGTTGTATTCAAACACTAATTTTGTGAACTCCCCACATTCACACATTGAAAACTTGCTGGAGATTTATGGATTTATCTGGATTCTTCAAATGTCCAATATTACAGAAATAATCTCAAAAAGGTTTAAAGTGAAGgcaggtttctgcaggtttcatagttaaatttaagaccgttatgaatgaaattttagactcatgaaggactaaaggctaaggaatttttaCGAATGACCCAGATAAAAAGCATTTTCATTTGACCtatcaaaaaataattattatttaatacatttaataatacattaataataaacaattaaattattctagattttatttctttaaatattgtgtaaaacaggcaagctctacttgtatctaTACACTTTTTTCAACAAACgttctttgaaataaaaaatactaataataaataaataatcaacaaatgttttataagtttttaaaactttaagaaACTAAACCtgcaatctgtccaggtcggtgtTCTCAGGAGTAAATAAacagaacttttaaacaaatgataTTATAAGGAAAATAATGAAACCATTATagtaaatagagtaaaaaaaaaaaaaaacgacctttttaaacaaagtttaaagttttattgagattagGATTATTGGTGATCTCATAAATTTTGGCCAGATTGAGTAGCAATtaatgaaaaaaaggaaaattaagacatgtttaaaaaaaagattgaaaacctaaaacacaatatttcagtaaatttaagactttttaagtcctaaaatttggattttgagatttggGACATTTTAAGACCACGCAGAACCCCTGGAAGCtctaataaatgacagaattttttattCTTGGGTGAACTACTACACCTTTAAGTCATAACTGTTTATGTTACATCATAACtgttaataatttattagttTAGGATCCAGTAAACAAGGTTGGAATGCATCATGCAAAAAAGTGAAAGGCCCTGCGTGCTGTACTGGGGGCCCCACCTGGAGGACACCTGCAGAATAACACCAATACAGCAGCACAGCTTAGGCACAATCTTTTTACTACTcgcattaaaaacacaaaaagggGGATAAAAGATGTGTGCAAACATTGATAAGGCCGAGTCTGTCATTGAGTCTTTTAATCACAAATGGCATCAACTCATTCTCACAAACAGCATCTTTGCCTTTCtctcacgtttttttttttttttttttaaagtttattttacaatttatggAATAAATTttcacttggaaaaaaaaaaagacagtttttGCATTTCCAGATGAAAAGCTTCCTCTTCTGAACTTcagatttattcatgttaataaatacctTCCCGTAAGATTCAGAGCCCTCCATGAAAATTAATATAGATATGTTATGGAGAAGAGATGGAAAAACTGATCAGATTTTTCTTTGAAttactttacaaaaaaaacacaaaaggtgGATATCCAGAAAGGCAGAAAATCAgacaaaaaggaaaaatcaaacaaagaaagaaaatgtcAGATGAACCGAGAACAGAAAAACCCATCAGATGTTACAGGAAGCGCCCTtttcaacataaaacaaaaggTTGAATATTCACACTAAAAATACGCACTCTCCACCTGCATGCTACTCAGTAGTGGATCCACATTAAGGTGAACTAAGACAAAGTGCATTCAGGCTAGTAATGCAGCATTTTATAAACCTACAACTAATTCAA

Function

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0015485 cholesterol binding molecular_function
GO:0015248 sterol transporter activity molecular_function
GO:0032934 sterol binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081002-4 Predicted to enable cholesterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; intracellular membrane-bounded organelle; and membrane. Orthologous to human OSBPL10 (oxysterol binding protein like 10).

Ensembl:

ensembl_id ENSDART00000043823

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021739 lncRNA upstream 537181 38731787 ~ 38733942 (+) True XLOC_010134
TCONS_00020095 lncRNA upstream 1019023 38240045 ~ 38252100 (+) True XLOC_010127
TCONS_00021738 lncRNA upstream 1557486 37713264 ~ 37713637 (+) True XLOC_010118
TCONS_00021997 lncRNA upstream 1610512 37659520 ~ 37660611 (+) True XLOC_010117
TCONS_00021996 lncRNA upstream 1629260 37633447 ~ 37641863 (+) True XLOC_010116
TCONS_00021998 lncRNA downstream 238051 39624124 ~ 39627370 (+) True XLOC_010142
TCONS_00021999 lncRNA downstream 241640 39627713 ~ 39628196 (+) True XLOC_010143
TCONS_00022000 lncRNA downstream 245537 39631610 ~ 39632068 (+) True XLOC_010144
TCONS_00022001 lncRNA downstream 471112 39857185 ~ 39901940 (+) False XLOC_010145
TCONS_00020124 lncRNA downstream 472599 39858672 ~ 39901940 (+) False XLOC_010145
TCONS_00020120 mRNA upstream 25044 39242339 ~ 39246079 (+) True XLOC_010139
TCONS_00020119 mRNA upstream 37672 39196727 ~ 39233451 (+) True XLOC_010138
TCONS_00020115 mRNA upstream 102283 39146696 ~ 39168840 (+) False XLOC_010137
TCONS_00020118 mRNA upstream 102283 39159752 ~ 39168840 (+) True XLOC_010137
TCONS_00020116 mRNA upstream 103623 39146809 ~ 39167500 (+) False XLOC_010137
TCONS_00020123 mRNA downstream 99535 39485608 ~ 39583668 (+) True XLOC_010141
TCONS_00020127 mRNA downstream 638810 40024883 ~ 40031779 (+) True XLOC_010149
TCONS_00020128 mRNA downstream 657600 40043673 ~ 40074145 (+) False XLOC_010150
TCONS_00020129 mRNA downstream 657634 40043707 ~ 40074142 (+) False XLOC_010150
TCONS_00020134 mRNA downstream 745453 40131526 ~ 40314090 (+) False XLOC_010153
TCONS_00020117 other upstream 112941 39147002 ~ 39158182 (+) False XLOC_010137
TCONS_00020107 other upstream 874328 38394413 ~ 38396795 (+) True XLOC_010132
TCONS_00020102 other upstream 918845 38350723 ~ 38352278 (+) False XLOC_010130
TCONS_00020097 other upstream 971479 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020086 other upstream 1249989 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020126 other downstream 625796 40011869 ~ 40011991 (+) True XLOC_010148
TCONS_00020136 other downstream 797670 40183743 ~ 40183859 (+) True XLOC_010154
TCONS_00020139 other downstream 916718 40302791 ~ 40320230 (+) True XLOC_010153
TCONS_00020142 other downstream 960374 40346447 ~ 40347376 (+) False XLOC_010157
TCONS_00020144 other downstream 960522 40346595 ~ 40348954 (+) True XLOC_010157

Expression Profile

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