RNA id: TCONS_00021740


Basic Information

Item Value
RNA id TCONS_00021740
length 1143
lncRNA type antisense_over
GC content 0.55
exon number 3
gene id XLOC_010145
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 39857185 ~ 39901940 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tagatatatacactagatatcgcatggGGACCCTgaacatgcgtcaatagcgccgccacatttgtacagtgctcccaggacatgtcattcaaccgcaccaGTCACGACAGTGTGCcagtgtgaagatgctggactttagcgctatGTACGGGGGTAGTAACGAGAAAAcgaagcacaaaggcagaacatttcatagCTAGAGGCTAGATCCGTGTAAGGGACGGAGCCAGAGGAATGatggagagagagaatgagatgATATGGACACAGGCGAGCGTGCGTGCACCGTGCCTCTCCTCTTCTCACCGTCTTTGGGAGCAGGGGAGGAGGAGGTGATGGAAGGAGAGCGGAGGTACGAGGATGGGATAGCAGCGGAGGTGTGCACGAAGAGAGAAGGAGCAGCGGCACAGGAGAGAGgagagaaggaaggaaggagTCGGTGCAGCGTCGGTTCCCAGAGGAGCTTGTCAGATATCCCAGTCGCACACTTTGTTCCCGTCTGGCAGATGCACAAAGCAGCAATGTAGACAGTCGTCGGATCTGGATCTCTGCACGCACAGCTGATGGGACTCAAACCCTCCACAGGAAGAACCAGACGTGAGCTGAGATGTTGTGAAGCACACAGGAAACGGCACAAACTCCAGGCAGACTGCAGTATCCGTAAAAAGTCCAGGTGTAACAATGCTGTTGTTCCTCTGTGATGTTCTTTTCTTTATTACCCGCCTCCCTCGTCTGCTTGCTTTGTTGCGCGCGCgagagtgtgtgtgcgagagtgagtgtgagtgtgtgtgcttgtgtgagagtgtgtgagtgagtgtgtgtgtgtgcgcgctgccgGCTGCTCCACACTGTGGGGAAGATTGAAAGGATCAGCTCGGGCACCGCCGCGTTCCTCCTCCTCCACAGCATGGTGGGCGGGACTAAGGGCTGGCTGCTCCACTCCCAGACAGGGGAGTGTCTTAAGGAGCCTATCTCTGTTTGTCCTCATGGGAAAGCTGCCGCCCACTGCATGGCTTCACTAGTGCAGAAGGGAACGACTTACTCTTACTCCCACACTCTGGGGGGAGGAGACTGAGGAAGACACAGCAAGGAGCCGAGGCCCCCTACTGGTCAATCACAGACTCTACCTCATCTGATCTCCTT

Function

GO:

id name namespace
GO:0006892 post-Golgi vesicle-mediated transport biological_process
GO:0033036 macromolecule localization biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0012505 endomembrane system cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022000 lncRNA upstream 227657 39631610 ~ 39632068 (+) True XLOC_010144
TCONS_00021999 lncRNA upstream 231529 39627713 ~ 39628196 (+) True XLOC_010143
TCONS_00021998 lncRNA upstream 232355 39624124 ~ 39627370 (+) True XLOC_010142
TCONS_00021739 lncRNA upstream 1125783 38731787 ~ 38733942 (+) True XLOC_010134
TCONS_00020095 lncRNA upstream 1607625 38240045 ~ 38252100 (+) True XLOC_010127
TCONS_00022002 lncRNA downstream 50500 39952357 ~ 39964699 (+) False XLOC_010146
TCONS_00022003 lncRNA downstream 60547 39962404 ~ 39966375 (+) True XLOC_010146
TCONS_00021741 lncRNA downstream 70312 39972169 ~ 39977388 (+) True XLOC_010147
TCONS_00020130 lncRNA downstream 141852 40043709 ~ 40049273 (+) False XLOC_010150
TCONS_00020131 lncRNA downstream 141938 40043795 ~ 40052553 (+) True XLOC_010150
TCONS_00020123 mRNA upstream 276057 39485608 ~ 39583668 (+) True XLOC_010141
TCONS_00020121 mRNA upstream 473652 39271123 ~ 39386073 (+) False XLOC_010140
TCONS_00020122 mRNA upstream 477157 39271250 ~ 39382568 (+) True XLOC_010140
TCONS_00020120 mRNA upstream 613646 39242339 ~ 39246079 (+) True XLOC_010139
TCONS_00020119 mRNA upstream 626274 39196727 ~ 39233451 (+) True XLOC_010138
TCONS_00020127 mRNA downstream 123026 40024883 ~ 40031779 (+) True XLOC_010149
TCONS_00020128 mRNA downstream 141816 40043673 ~ 40074145 (+) False XLOC_010150
TCONS_00020129 mRNA downstream 141850 40043707 ~ 40074142 (+) False XLOC_010150
TCONS_00020134 mRNA downstream 229669 40131526 ~ 40314090 (+) False XLOC_010153
TCONS_00020137 mRNA downstream 315186 40217043 ~ 40220920 (+) True XLOC_010155
TCONS_00020117 other upstream 701543 39147002 ~ 39158182 (+) False XLOC_010137
TCONS_00020107 other upstream 1462930 38394413 ~ 38396795 (+) True XLOC_010132
TCONS_00020102 other upstream 1507447 38350723 ~ 38352278 (+) False XLOC_010130
TCONS_00020097 other upstream 1560081 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020086 other upstream 1838591 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020126 other downstream 110012 40011869 ~ 40011991 (+) True XLOC_010148
TCONS_00020136 other downstream 281886 40183743 ~ 40183859 (+) True XLOC_010154
TCONS_00020139 other downstream 400934 40302791 ~ 40320230 (+) True XLOC_010153
TCONS_00020142 other downstream 444590 40346447 ~ 40347376 (+) False XLOC_010157
TCONS_00020144 other downstream 444738 40346595 ~ 40348954 (+) True XLOC_010157

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU107053 True 591 lncRNA 0.53 2 CI01000016 844085 ~ 846335 (-)