RNA id: TCONS_00022002


Basic Information

Item Value
RNA id TCONS_00022002
length 672
lncRNA type inter_gene
GC content 0.47
exon number 5
gene id XLOC_010146
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 39952357 ~ 39966375 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCAGACTAAACTGCTACAAATAGACAAATTACAATCACGTGGTGAAAGCGACGGCCAAAGCACAGCAGCAGTGAATCATAAGCGGAGCTCTCGCACATGCTGAACTGCTGCCATGAAGATGAATGGGAACGCTAACGGATCATTCTCTCAGTTTCGTATGACTGGGATTGATAATCAGACACAGCAGCCAAGTACCTGCTACATTTGGAATCGAAACCCGCACCCTGCCACCTCCTGACCGCATTACTCAACCAGagccaaacaaataaatcagaATAATGATAATAGTCAAAATTCAAATCAGCCCGAGGAAACGGTCCGTGAAAGCAGCGGTGGTGACGTACATTTGGCTGCGTTGTGTGTGATTTCCACGACAGTGTTTAAATAGGTGCGGTCCCACTCCTCCTCGCAGAGCTCAGCGTCTGGATTACTTCATAATCCACACCATATTATGGGCCTGGCACTAATTGAAAGATAAATGAGTTTATTTGGGTTAAATCCATCACCGTGACACGAACCCAGAGGAGAGCGAGGGGGAGAAGAGATGAGAGCGCAAGAGGAAAGCTGAAGACGTTTGACTCTCGCCTTTGTATCAGCCAATTGGATCTGAAGAAACATCCGTGGTGAAACACAGATGAAGGATCGCAGatttctataccacaaaagtgttc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022001 lncRNA upstream 50417 39857185 ~ 39901940 (+) False XLOC_010145
TCONS_00020124 lncRNA upstream 50417 39858672 ~ 39901940 (+) False XLOC_010145
TCONS_00021740 lncRNA upstream 50500 39859725 ~ 39901857 (+) True XLOC_010145
TCONS_00020125 lncRNA upstream 59479 39859724 ~ 39892878 (+) False XLOC_010145
TCONS_00022000 lncRNA upstream 320289 39631610 ~ 39632068 (+) True XLOC_010144
TCONS_00021741 lncRNA downstream 7470 39972169 ~ 39977388 (+) True XLOC_010147
TCONS_00020130 lncRNA downstream 79010 40043709 ~ 40049273 (+) False XLOC_010150
TCONS_00020131 lncRNA downstream 79096 40043795 ~ 40052553 (+) True XLOC_010150
TCONS_00020132 lncRNA downstream 110846 40075545 ~ 40081187 (+) False XLOC_010151
TCONS_00022004 lncRNA downstream 112612 40077311 ~ 40082056 (+) False XLOC_010151
TCONS_00020123 mRNA upstream 368689 39485608 ~ 39583668 (+) True XLOC_010141
TCONS_00020121 mRNA upstream 566284 39271123 ~ 39386073 (+) False XLOC_010140
TCONS_00020122 mRNA upstream 569789 39271250 ~ 39382568 (+) True XLOC_010140
TCONS_00020120 mRNA upstream 706278 39242339 ~ 39246079 (+) True XLOC_010139
TCONS_00020119 mRNA upstream 718906 39196727 ~ 39233451 (+) True XLOC_010138
TCONS_00020127 mRNA downstream 60184 40024883 ~ 40031779 (+) True XLOC_010149
TCONS_00020128 mRNA downstream 78974 40043673 ~ 40074145 (+) False XLOC_010150
TCONS_00020129 mRNA downstream 79008 40043707 ~ 40074142 (+) False XLOC_010150
TCONS_00020134 mRNA downstream 166827 40131526 ~ 40314090 (+) False XLOC_010153
TCONS_00020137 mRNA downstream 252344 40217043 ~ 40220920 (+) True XLOC_010155
TCONS_00020117 other upstream 794175 39147002 ~ 39158182 (+) False XLOC_010137
TCONS_00020107 other upstream 1555562 38394413 ~ 38396795 (+) True XLOC_010132
TCONS_00020102 other upstream 1600079 38350723 ~ 38352278 (+) False XLOC_010130
TCONS_00020097 other upstream 1652713 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020086 other upstream 1931223 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020126 other downstream 47170 40011869 ~ 40011991 (+) True XLOC_010148
TCONS_00020136 other downstream 219044 40183743 ~ 40183859 (+) True XLOC_010154
TCONS_00020139 other downstream 338092 40302791 ~ 40320230 (+) True XLOC_010153
TCONS_00020142 other downstream 381748 40346447 ~ 40347376 (+) False XLOC_010157
TCONS_00020144 other downstream 381896 40346595 ~ 40348954 (+) True XLOC_010157

Expression Profile

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