RNA id: TCONS_00022003


Basic Information

Item Value
RNA id TCONS_00022003
length 2512
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id XLOC_010146
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 39952357 ~ 39966375 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cagccgcaacccatctctgggaaacatccacatgcacacacaccccaAAAACACAAGGAATGTTAGTAACTTCTAAAAAATGATTGCATTTTGCAGCACTTTCAGTGTAAAATGTCATGTGAGTCGTCCTAAAAGCAGCTTTATGAATGCACAAATCATTTATGTGTATAGTTTTACCTGACACAGATGAATGTGAATCTGTATAATTACACTTGTTTTTGTATAAATCCAggcaaaagtgtttttaaaatgaagcTTTCTCAGTATTGACTTCCTGTTCATGGGactgttgtataaaagcaatatcacacaatAATCGTATACTTTCAGGAGCTCTCGCACATGCTGAACTGCTGCCATGAAGATGAATGGGAACGCTAACGGATCATTCTCTCAGTTTCGTATGACTGGGATTGATAATCAGACACAGCAGCCAAGTACCTGCTACATTTGGAATCGAAACCCGCACCCTGCCACCTCCTGACCGCATTACTCAACCAGagccaaacaaataaatcagaATAATGATAATAGTCAAAATTCAAATCAGCCCGAGGAAACGGTCCGTGAAAGCAGCGGTGGTGACGTACATTTGGCTGCGTTGTGTGTGATTTCCACGACAGTGTTTAAATAGGTGCGGTCCCACTCCTCCTCGCAGAGCTCAGCGTCTGGATTACTTCATAATCCACACCATATTATGGGCCTGGCACTAATTGAAAGATAAATGAGTTTATTTGGGTTAAATCCATCACCGTGACACGAACCCAGAGGAGAGCGAGGGGGAGAAGAGATGAGAGCGCAAGAGGAAAGCTGAAGACGTTTGACTCTCGCCTTTGTATCAGCCAATTGGATCTGAAGAAACATCCGTGGTGAAACACAGATGAAGGATCGCAGatttctataccacaaaagtgttcttggagctttgtatgaatACAGTTGAATCACCAAAGTCACAGatgaacgaaggtctcaggattggaacaacatgagggtgagtaatatatcatagaatttggaTGAACTAACCTTTTAAGTATGGCCTGCATATGAACCATTACTTTAATTGGTGGagtattttatcattcattcactttccttcagcttagtccctttattcatcaagggtcaccacagcgtaatgaatcgccaactttttcagcatatgttttatgcaacggatgcccttacagctgcaacccagtgctggaaaacacactcacacactacggtcagttttgtttattcagttcacctacagtgcatgtctgGGAAACCAGAGAAAACCCATACCAACATAGgtggaacatgcaaacttctcacagaaattTCAACTAACCcatctgggactcaaaccagcgaacttctcACTGTGAGACGACAGTCCTAACCACTGTGCCATTCTATTTTATCAATAAAACAAGTTTGCCAAATGAAtatcatgaaaaataaattacatgaGTATTATTTCAGAGAAAAATTATATTTTCcacaaaaattgtaaacaatttcCAACTTTTTATtgagtttgcattttttttttaaatactaatgtCAACTGAGAGCGTTTTGGAATGAAAACCGCTGTTTGAACGTGTCTGGATTAATGTAGACCACAGGGGTGTCCTGCTTCTGGAGGGCCAATGtctcagattttagctccaacataCATGCCTAGAAGTGAGTctgaagaccttgattagcttcaGGTGTGTGTAATTGCGGTTGGAGCTATACTCCTCAGTATAGTGGCTCTCCAAAAACATCTCTGGATGTAGATGTAGCCTTACTTTTTTCCCAAAATGTGCGGCAGCCAAAGAGGGTTAATGGTGTCTGAGTGCAGACGTCAGGGCTGGACACCATGCAGTCAGACACGGTTCACATTTTCCACTTCGTACACTGTCTCTTATTAACAACTGAAATGTGCAGAGCTTGTTGCACCgccagtgtgtgtgagtgtgtgacaaATCAAAACTGCTTCATGGAAATATGGCAAAGTtaaaggggaagaaaaaaaaacgtctGGGTTTTGAGAGCCACAGGCAGCATTGAGATCTGTCCCTAAATATAACTGCTGAACTTGTGAACTATAGAGGCTTGTGCAAAGCGTGAACTTTTTGCGGTGACAAAGGAGAACAAAACTGGCTTCTTTTTCTCACACTTTTAAAGACACAGatgtagtctttttttttttttcaaagtgggCCACATGACCCGTCCTGCATCATAAATTCACATACACAGCATCTGGCTTTGCTCCTGCCAAACGCTGAAAACCACAGGTGCATTTCTCAGAGACGAGTGAAATACATCCACATCTAATAGTCTAGAATTTTTTGGAAACATCAAAAACAGCCATGATCTCAGTGCACATACAGAAGATGATTCAACATTCTGTTTAACACATACAGTATACTACCTGATAACTacccatccaagttttaggaagaacaaataataaattgacttctagttaatcatttggtatcagaagttgattatatgaaaggca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022001 lncRNA upstream 60464 39857185 ~ 39901940 (+) False XLOC_010145
TCONS_00020124 lncRNA upstream 60464 39858672 ~ 39901940 (+) False XLOC_010145
TCONS_00021740 lncRNA upstream 60547 39859725 ~ 39901857 (+) True XLOC_010145
TCONS_00020125 lncRNA upstream 69526 39859724 ~ 39892878 (+) False XLOC_010145
TCONS_00022000 lncRNA upstream 330336 39631610 ~ 39632068 (+) True XLOC_010144
TCONS_00021741 lncRNA downstream 5794 39972169 ~ 39977388 (+) True XLOC_010147
TCONS_00020130 lncRNA downstream 77334 40043709 ~ 40049273 (+) False XLOC_010150
TCONS_00020131 lncRNA downstream 77420 40043795 ~ 40052553 (+) True XLOC_010150
TCONS_00020132 lncRNA downstream 109170 40075545 ~ 40081187 (+) False XLOC_010151
TCONS_00022004 lncRNA downstream 110936 40077311 ~ 40082056 (+) False XLOC_010151
TCONS_00020123 mRNA upstream 378736 39485608 ~ 39583668 (+) True XLOC_010141
TCONS_00020121 mRNA upstream 576331 39271123 ~ 39386073 (+) False XLOC_010140
TCONS_00020122 mRNA upstream 579836 39271250 ~ 39382568 (+) True XLOC_010140
TCONS_00020120 mRNA upstream 716325 39242339 ~ 39246079 (+) True XLOC_010139
TCONS_00020119 mRNA upstream 728953 39196727 ~ 39233451 (+) True XLOC_010138
TCONS_00020127 mRNA downstream 58508 40024883 ~ 40031779 (+) True XLOC_010149
TCONS_00020128 mRNA downstream 77298 40043673 ~ 40074145 (+) False XLOC_010150
TCONS_00020129 mRNA downstream 77332 40043707 ~ 40074142 (+) False XLOC_010150
TCONS_00020134 mRNA downstream 165151 40131526 ~ 40314090 (+) False XLOC_010153
TCONS_00020137 mRNA downstream 250668 40217043 ~ 40220920 (+) True XLOC_010155
TCONS_00020117 other upstream 804222 39147002 ~ 39158182 (+) False XLOC_010137
TCONS_00020107 other upstream 1565609 38394413 ~ 38396795 (+) True XLOC_010132
TCONS_00020102 other upstream 1610126 38350723 ~ 38352278 (+) False XLOC_010130
TCONS_00020097 other upstream 1662760 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020086 other upstream 1941270 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020126 other downstream 45494 40011869 ~ 40011991 (+) True XLOC_010148
TCONS_00020136 other downstream 217368 40183743 ~ 40183859 (+) True XLOC_010154
TCONS_00020139 other downstream 336416 40302791 ~ 40320230 (+) True XLOC_010153
TCONS_00020142 other downstream 380072 40346447 ~ 40347376 (+) False XLOC_010157
TCONS_00020144 other downstream 380220 40346595 ~ 40348954 (+) True XLOC_010157

Expression Profile

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