RNA id: TCONS_00020127


Basic Information

Item Value
RNA id TCONS_00020127
length 823
RNA type mRNA
GC content 0.41
exon number 5
gene id XLOC_010149
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 40024883 ~ 40031779 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCGTGATGATGTAATTATCGCTGACGTCACGTTTTGAAGATGGCAGACGCCGCAAACACACCGACACCTGAGAGCTGTATAGCAAGTCATTCTGATGAAGAATatgacaaaaaatgtattttctgtaaAATCTTAAAGGGTGAGATGGGAACAGAGCTTCTACACAGCGATGAGACTGTGTCCTGTTTCCAAGATATCCACCCTGGAGCTCCTCATCACTATCTGGTTGTGCCAAGTAAACATGTTGGCAATTGCAAATCTCTCAGCAAAGAGCACGTACCGTTAGTGGAAAAGATGCTGGAAACGGGGAAAGAGATACTTGAGAAGAACAATGTGACTGATTTAAGTGATGTTAGGTTTGGCTTCCATTGGCCTCCATTCTGCTCCGTCACACATCTACATCTTCATGTTCTCGCACCCGTCAGTCAGATGGGCTTCATGTCACGTTTGATCTACAGGTTAAACTCGTATTGGTTCGTTACGGCAGACCAGTTACTCCAAAGACTGAACTCTATGGGCTAAATATTACCACACTAATGTAGTGTATTGAAACTCCAAATAACACTAAAGATTGAGATGCCCAGAGCCATGTTACTAATAACAACCGTCCAATCTGTTTGTGATGACGGAAGGTCACAGTTGAGTGCCTCTGGGTTATAATACTCATTAATGCTGCAATCATTGTTAGTTATATCATCGGCCAGACGGGCTAATCAAATTTGCAGCTACTTTTGAATTGCTTGTGAACAAAAAAGGCATGCAGAATAGTAATGACACTGATAATTTTGACAGAATCATTAATCTTTTATGGTGAACAGTTG

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-168 Predicted to enable catalytic activity. Orthologous to human HINT3 (histidine triad nucleotide binding protein 3).

Ensembl:

ensembl_id ENSDART00000110100

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021741 lncRNA upstream 47495 39972169 ~ 39977388 (+) True XLOC_010147
TCONS_00022003 lncRNA upstream 58508 39962404 ~ 39966375 (+) True XLOC_010146
TCONS_00022002 lncRNA upstream 60184 39952357 ~ 39964699 (+) False XLOC_010146
TCONS_00022001 lncRNA upstream 122943 39857185 ~ 39901940 (+) False XLOC_010145
TCONS_00020124 lncRNA upstream 122943 39858672 ~ 39901940 (+) False XLOC_010145
TCONS_00020130 lncRNA downstream 11930 40043709 ~ 40049273 (+) False XLOC_010150
TCONS_00020131 lncRNA downstream 12016 40043795 ~ 40052553 (+) True XLOC_010150
TCONS_00020132 lncRNA downstream 43766 40075545 ~ 40081187 (+) False XLOC_010151
TCONS_00022004 lncRNA downstream 45532 40077311 ~ 40082056 (+) False XLOC_010151
TCONS_00022005 lncRNA downstream 45735 40077514 ~ 40082056 (+) True XLOC_010151
TCONS_00020123 mRNA upstream 441215 39485608 ~ 39583668 (+) True XLOC_010141
TCONS_00020121 mRNA upstream 638810 39271123 ~ 39386073 (+) False XLOC_010140
TCONS_00020122 mRNA upstream 642315 39271250 ~ 39382568 (+) True XLOC_010140
TCONS_00020120 mRNA upstream 778804 39242339 ~ 39246079 (+) True XLOC_010139
TCONS_00020119 mRNA upstream 791432 39196727 ~ 39233451 (+) True XLOC_010138
TCONS_00020128 mRNA downstream 11894 40043673 ~ 40074145 (+) False XLOC_010150
TCONS_00020129 mRNA downstream 11928 40043707 ~ 40074142 (+) False XLOC_010150
TCONS_00020134 mRNA downstream 99747 40131526 ~ 40314090 (+) False XLOC_010153
TCONS_00020137 mRNA downstream 185264 40217043 ~ 40220920 (+) True XLOC_010155
TCONS_00020138 mRNA downstream 269277 40301056 ~ 40339027 (+) False XLOC_010153
TCONS_00020126 other upstream 12892 40011869 ~ 40011991 (+) True XLOC_010148
TCONS_00020117 other upstream 866701 39147002 ~ 39158182 (+) False XLOC_010137
TCONS_00020107 other upstream 1628088 38394413 ~ 38396795 (+) True XLOC_010132
TCONS_00020102 other upstream 1672605 38350723 ~ 38352278 (+) False XLOC_010130
TCONS_00020097 other upstream 1725239 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020136 other downstream 151964 40183743 ~ 40183859 (+) True XLOC_010154
TCONS_00020139 other downstream 271012 40302791 ~ 40320230 (+) True XLOC_010153
TCONS_00020142 other downstream 314668 40346447 ~ 40347376 (+) False XLOC_010157
TCONS_00020144 other downstream 314816 40346595 ~ 40348954 (+) True XLOC_010157
TCONS_00020150 other downstream 544900 40576679 ~ 40585776 (+) False XLOC_010161

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_00775184_00778097.mRNA True 1147 mRNA 0.39 5 CI01000016 774658 ~ 778097 (-)