RNA id: TCONS_00020129


Basic Information

Item Value
RNA id TCONS_00020129
length 1397
RNA type mRNA
GC content 0.42
exon number 12
gene id XLOC_010150
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 40043673 ~ 40074145 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCACACCAACATGGCGCTCCACTGTGGTCGGGCGTGTAGGCAATATTTACTTCATCTGGCACACGATAACGTCGATTTTAGATTAGCGGAAATAAAAGCATTACTCTCTCTAAGGGACCGGCCGTTTGAGACACCCGAAACATTTAAAGAAAAGTCTCCCTTCTGGCATCTAAATGGCTTGTCAGAAGACGACATACGGAGTGTCATGTCCAGAACGGTTTGTGGAAAgtCTGCTTTTGAACTGTGGGGTCATGGAAAGACGACAGAGGAGCTTCGGAGGTCGTTATTGGAGTATCCATCAGAAAACATGGCTCCATATCTGCAGCAAAACTCAACCTATAAGATCAATGTCTACACTTTTAACAAAACATTAGAATTTAAGGACAGAATCAAAAAAATCGATgCTCTAGACTTCTTACCATTTGAAGGAACAGTTAACCTCAAGGACCCAGAACATATTTTCTGCTTGCTAGAGGATTATGGAACTGATCCTAATGACATCCCGGAAGAGCCTGTCTATGTGTACTTTGGGAGATGGATTGCAGACGGTCAGAGAGAGTTAATTCGCTCTTACAGTGTGAAGAAGAGACATTTCATTGGAAACACTAGTATGGACGCTGGCCTTTCTTTCATTATGGCCAATCATGCCAAAGTTAAAGCTAATGACTTGGTTTATGATCCTTTTGTTGGAACAGgtAGTCTTTTGGTAGCATGTTCACACTTTGGGGCATATGTATGTGGGACAGACATTGATTATAACACTATCCATGGAATAGGAAAGGCCAGCAGGAAGAATCAAAAATGGAGAGGACCAGATGAGAACATTCGAGCAAACTTGCGTCAGTATGGGGCTGAAAATCTCTATGTGGACGTCATGGTGTCTGATGCCTCCAAACTGGTTTGGAGACGAAATGCCCAGTTTGATGCCATTATTACAGACCCTCCATATGGCATTCGTGAGTCCACACGGAGAACAGGATCTCATAAAGATATCATCAAACCTCCTGAGGATTTCTCTGGAGAGAGTCACGTGCCCGTTTCAATGGCTTATCATCTCAGTGATATCTTTGCCGACCTCTTGAATTTTGCAGCCCATCACTTGGTTTTAGGTGGACGTCTTGTCTACTGGCTTCCTATCTACAGGCCAGAGATTCGGACAGTCTAGCACACCTTGCTGACCCTCGCTTCACCCCATACCACGGTCACAACTCTTTCAGAGAAAAATACTTCAGCGGTCTCACCAAGAAAAATGGAAAGAACGCCAAAGTCACTGCAGAAAATGAAGATTAAAACGTAAAAAACACTGTTTTATGCttgtatacaattttttttacaatctttttaTTCCATAATTTTGATATGTAAATATGTTGTTTCAAATAAAACACATTGTTTTA

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-040426-953 Predicted to enable tRNA (guanine-N2-)-methyltransferase activity. Predicted to act upstream of or within methylation. Predicted to be active in cytoplasm. Orthologous to human TRMT11 (tRNA methyltransferase 11 homolog).

Ensembl:

ensembl_id ENSDART00000125484

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021741 lncRNA upstream 66319 39972169 ~ 39977388 (+) True XLOC_010147
TCONS_00022003 lncRNA upstream 77332 39962404 ~ 39966375 (+) True XLOC_010146
TCONS_00022002 lncRNA upstream 79008 39952357 ~ 39964699 (+) False XLOC_010146
TCONS_00021740 lncRNA upstream 141850 39859725 ~ 39901857 (+) True XLOC_010145
TCONS_00020125 lncRNA upstream 150829 39859724 ~ 39892878 (+) False XLOC_010145
TCONS_00020132 lncRNA downstream 1403 40075545 ~ 40081187 (+) False XLOC_010151
TCONS_00022004 lncRNA downstream 3169 40077311 ~ 40082056 (+) False XLOC_010151
TCONS_00022005 lncRNA downstream 3372 40077514 ~ 40082056 (+) True XLOC_010151
TCONS_00022006 lncRNA downstream 8760 40082902 ~ 40114807 (+) True XLOC_010152
TCONS_00020133 lncRNA downstream 57322 40131464 ~ 40153682 (+) False XLOC_010153
TCONS_00020127 mRNA upstream 11928 40024883 ~ 40031779 (+) True XLOC_010149
TCONS_00020123 mRNA upstream 460039 39485608 ~ 39583668 (+) True XLOC_010141
TCONS_00020121 mRNA upstream 657634 39271123 ~ 39386073 (+) False XLOC_010140
TCONS_00020122 mRNA upstream 661139 39271250 ~ 39382568 (+) True XLOC_010140
TCONS_00020120 mRNA upstream 797628 39242339 ~ 39246079 (+) True XLOC_010139
TCONS_00020134 mRNA downstream 57384 40131526 ~ 40314090 (+) False XLOC_010153
TCONS_00020137 mRNA downstream 142901 40217043 ~ 40220920 (+) True XLOC_010155
TCONS_00020138 mRNA downstream 226914 40301056 ~ 40339027 (+) False XLOC_010153
TCONS_00020140 mRNA downstream 266080 40340222 ~ 40345372 (+) False XLOC_010156
TCONS_00020141 mRNA downstream 266381 40340523 ~ 40344211 (+) True XLOC_010156
TCONS_00020126 other upstream 31716 40011869 ~ 40011991 (+) True XLOC_010148
TCONS_00020117 other upstream 885525 39147002 ~ 39158182 (+) False XLOC_010137
TCONS_00020107 other upstream 1646912 38394413 ~ 38396795 (+) True XLOC_010132
TCONS_00020102 other upstream 1691429 38350723 ~ 38352278 (+) False XLOC_010130
TCONS_00020097 other upstream 1744063 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020136 other downstream 109601 40183743 ~ 40183859 (+) True XLOC_010154
TCONS_00020139 other downstream 228649 40302791 ~ 40320230 (+) True XLOC_010153
TCONS_00020142 other downstream 272305 40346447 ~ 40347376 (+) False XLOC_010157
TCONS_00020144 other downstream 272453 40346595 ~ 40348954 (+) True XLOC_010157
TCONS_00020150 other downstream 502537 40576679 ~ 40585776 (+) False XLOC_010161

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_00754785_00770356.mRNA True 1134 mRNA 0.42 9 CI01000016 754683 ~ 770356 (-)