RNA id: TCONS_00022006


Basic Information

Item Value
RNA id TCONS_00022006
length 1406
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id XLOC_010152
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 40082902 ~ 40114807 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gttaagcactatgaatattttccggatgcactgtagaaTATGCAGTTACAGTTTTACAGTGAAAACATTCAGATTTTATaaatacccacatagcaaaatgtcTCTTGCCTAGCTCttgcccacacaatcaggttttgcttggcccacatgccgcagtgaattacggtacatgactgtaCCAAGTCTGGCTTTCAGACAAGGGCCAagcatggaccatatctgggccaagtgtCAGCCAAGTTAAGAATCCATAACTGatcctgaactgggccagatatgttggtgtgtcacgagtCACGACTACAGTGAAACACTCTGACAAACCAGGGTCATGTTTGATGCTGTATACCAGTGCCAGATAAATGcttgctgtgccagatttatgccaaatcagGACAAGAATTCTTTGCCACCTGGGTATGAACTCCAGCAAGGGCTAACCGTATGCTTTAATTTTACAGTTGCTAGGTTGTTATACCTAAGAGGAGCCACTCCAAATAATCGTGTCAATGACTTTTCATACATTTCCTTAAATAGGCTTTATGACAAAATCTCTTTACTACTTAAGTTTTttgacagcaaaaaaataaataaatctgttcatTCCAGCTGCCTCCATTATTATCTCACTTCCTCCCACTGGACATTCCACAACAGTTCCGACCTTTTCTCACTTCGCTGGAGTGGCTGGGATGCAATAACACTTTGATTATGAATTTCTTCTCCTTGAGAAAACCCAGACGAGTCTAGAACACACGCCATGCTTTGAAAAAGTGGAAACTGAGAGTCAATGACCGTCCTGTCGTACCATCACATCCTTTATCACATCCATTTCCTCTTAACCCGCCATGACCCCCAATTTACATAAGTCTTGCATTCTCTGATTTcgttaaaaaaatatctgttttcaACCCGTCGGTCAAAGTGGGTTTTATTGCCGCTAGAGTTACCACAAACTTCCCTTTCACCCCTTTCTGAGGCGAACTTGACAAACAttgacaaacaagaaaaaaatgtgttgttgacATTGATAATAAACTCGAAAGTCTCTAAAACATCTGCAAGGGAAGTTCGAGGGGAAAATGGCTTAACGACGGGCCGACATAATTACGCTCAATGAGGGGAACCTCTAACGCGTTCATCCCGCTGCATTTTAATGAGTCGTGGGTGCCAAGTGGCAACTGTGGTTCCCATCACACCAACCTCTGCATCTTTCTCTTTCCATTCCTATAGGCATAAACCAGGCTGACCAGTTTCAACAGTGGGGGAAAAGAAGAGCAACATATGAGGAGGAGAGAAGTCTAAGACCACACTGAAAACCCACACCAGGCCTTTCAATGGGATGAGAGTCATGAGCATCACGGACACAGAACAGAAGTGATATTGTCCACACGGAGAGCATGCTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022004 lncRNA upstream 846 40077311 ~ 40082056 (+) False XLOC_010151
TCONS_00022005 lncRNA upstream 846 40077514 ~ 40082056 (+) True XLOC_010151
TCONS_00020132 lncRNA upstream 1715 40075545 ~ 40081187 (+) False XLOC_010151
TCONS_00020131 lncRNA upstream 30349 40043795 ~ 40052553 (+) True XLOC_010150
TCONS_00020130 lncRNA upstream 33629 40043709 ~ 40049273 (+) False XLOC_010150
TCONS_00020133 lncRNA downstream 16657 40131464 ~ 40153682 (+) False XLOC_010153
TCONS_00020135 lncRNA downstream 16773 40131580 ~ 40153682 (+) False XLOC_010153
TCONS_00020143 lncRNA downstream 231677 40346484 ~ 40354078 (+) False XLOC_010157
TCONS_00020153 lncRNA downstream 465693 40580500 ~ 40583150 (+) True XLOC_010161
TCONS_00022007 lncRNA downstream 758434 40873241 ~ 40893518 (+) True XLOC_010162
TCONS_00020128 mRNA upstream 8757 40043673 ~ 40074145 (+) False XLOC_010150
TCONS_00020129 mRNA upstream 8760 40043707 ~ 40074142 (+) False XLOC_010150
TCONS_00020127 mRNA upstream 51123 40024883 ~ 40031779 (+) True XLOC_010149
TCONS_00020123 mRNA upstream 499234 39485608 ~ 39583668 (+) True XLOC_010141
TCONS_00020121 mRNA upstream 696829 39271123 ~ 39386073 (+) False XLOC_010140
TCONS_00020134 mRNA downstream 16719 40131526 ~ 40314090 (+) False XLOC_010153
TCONS_00020137 mRNA downstream 102236 40217043 ~ 40220920 (+) True XLOC_010155
TCONS_00020138 mRNA downstream 186249 40301056 ~ 40339027 (+) False XLOC_010153
TCONS_00020140 mRNA downstream 225415 40340222 ~ 40345372 (+) False XLOC_010156
TCONS_00020141 mRNA downstream 225716 40340523 ~ 40344211 (+) True XLOC_010156
TCONS_00020126 other upstream 70911 40011869 ~ 40011991 (+) True XLOC_010148
TCONS_00020117 other upstream 924720 39147002 ~ 39158182 (+) False XLOC_010137
TCONS_00020107 other upstream 1686107 38394413 ~ 38396795 (+) True XLOC_010132
TCONS_00020102 other upstream 1730624 38350723 ~ 38352278 (+) False XLOC_010130
TCONS_00020097 other upstream 1783258 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020136 other downstream 68936 40183743 ~ 40183859 (+) True XLOC_010154
TCONS_00020139 other downstream 187984 40302791 ~ 40320230 (+) True XLOC_010153
TCONS_00020142 other downstream 231640 40346447 ~ 40347376 (+) False XLOC_010157
TCONS_00020144 other downstream 231788 40346595 ~ 40348954 (+) True XLOC_010157
TCONS_00020150 other downstream 461872 40576679 ~ 40585776 (+) False XLOC_010161

Expression Profile

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