RNA id: TU528604


Basic Information

Item Value
RNA id TU528604
length 652
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G460455
representative True

Chromosome Information

Item Value
chromosome id CI01000323
NCBI id null
chromosome length 493539
location 475460 ~ 476111 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTCTTGCCTTTGTTATACAAAGATGTTAAATAACTTAAATACATTCTTACCAGTCATTCATGATCAGTTTATACCTACAAGCTATACACATGAGGTAGAGGAAAATAATTTAGAGGAAAATAGATTCCCATTAGACAAGAAAAAGTGGACAAAGACAAACTACTGACAAAAACTCTGCCCTTAAAAGAAAAAGAATGCATTTTAATAGTTGCAGCATTGCACAAACCCTGACAAAAATCAGAATAGTGACCAAGCTATTGGAAAATAATAAAGAAAAAAATTACTGTGCATTTGTCAAATGCTAAGTGTCTGCAATCCATTCTCAATAAATGTAAATCTAAACAATGAACTCACTTGCTGGTTCTTAAAGTTATGTTTATTAGCCTTTATGCTACAAATAATGAGATTGTTACAGCTAACTCGGGAGGGGAGGGGAGGGTTGGGGTCATATACCTCAACCCCAAAAAGCAAATACCCAATTATAAGCCAAATGAAAGACAGAGAATATATATCTAGAAAATCATCTTCAGTTTTACAAAATGTACAAATAACACATGCTCATAAAACATTTCAAAATATATTGTCTCTGTGTCCTTTTTCCACAACCACATACATTTTATACACATTGCATTGGAAAGTAAGATTAAGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU528606 lncRNA downstream 84 474871 ~ 475376 (-) True G460457
TU528575 lncRNA downstream 29558 439511 ~ 445902 (-) False G460434
TU528578 lncRNA downstream 33936 439511 ~ 441524 (-) True G460434
TU528290 lncRNA downstream 306403 95378 ~ 169057 (-) False G460200
TU528289 lncRNA downstream 306403 165219 ~ 169057 (-) True G460200
TU528612 lncRNA upstream 1744 477855 ~ 478215 (-) False G460459
TU528615 lncRNA upstream 1822 477933 ~ 478215 (-) True G460459
TU528616 lncRNA upstream 3006 479117 ~ 479357 (-) True G460460
CI01000323_00404644_00405142.mRNA mRNA downstream 70318 404125 ~ 405142 (-) True CI01000323_00404644_00405142
CI01000323_00328972_00333383.mRNA mRNA downstream 141913 328967 ~ 333547 (-) True CI01000323_00328972_00333383
CI01000323_00121706_00125427.mRNA mRNA downstream 350033 120874 ~ 125427 (-) True CI01000323_00121706_00125427
CI01000323_00058863_00066027.mRNA mRNA downstream 409433 58414 ~ 66027 (-) True CI01000323_00058863_00066027
CI01000323_00008871_00010120.mRNA mRNA downstream 465340 8688 ~ 10120 (-) True CI01000323_00008871_00010120
CI01000323_00488566_00489842.mRNA mRNA upstream 11325 487436 ~ 489842 (-) True CI01000323_00488566_00489842

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU157136 True 354 lncRNA 0.37 1 CI01000027 1003993 ~ 1004346 (+)
eurasian perch (Perca fluviatilis) TU157136 True 4348 lncRNA 0.40 2 NC_053122.1 21129608 ~ 21134012 (+)
bowfin (Amia calva) TU39269 True 2212 lncRNA 0.36 1 CM030124.1 2854448 ~ 2856659 (-)
mexican tetra (Astyanax mexicanus) TU416308 False 2762 lncRNA 0.37 2 NW_019172834.1 1331860 ~ 1334821 (-)