Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00020151 |
| length | 2123 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 10 |
| gene id | XLOC_010161 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 40575742 ~ 40586793 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051726 | regulation of cell cycle | biological_process |
| GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity | biological_process |
| GO:0000082 | G1/S transition of mitotic cell cycle | biological_process |
| GO:0044772 | mitotic cell cycle phase transition | biological_process |
| GO:0000307 | cyclin-dependent protein kinase holoenzyme complex | cellular_component |
| GO:0005813 | centrosome | cellular_component |
| GO:0097134 | cyclin E1-CDK2 complex | cellular_component |
| GO:0097135 | cyclin E2-CDK2 complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-9689 | Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in G1/S transition of mitotic cell cycle and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within regulation of cell cycle. Predicted to be part of cyclin E1-CDK2 complex and cyclin E2-CDK2 complex. Predicted to be active in centrosome; cytoplasm; and nucleus. Is expressed in brain; digestive system; head; and proliferative region. Human ortholog(s) of this gene implicated in castration-resistant prostate carcinoma. Orthologous to human CCNE2 (cyclin E2). |
| ensembl_id | ENSDART00000169412 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00020143 | lncRNA | upstream | 222601 | 40346484 ~ 40354078 (+) | False | XLOC_010157 |
| TCONS_00020133 | lncRNA | upstream | 422997 | 40131464 ~ 40153682 (+) | False | XLOC_010153 |
| TCONS_00020135 | lncRNA | upstream | 422997 | 40131580 ~ 40153682 (+) | False | XLOC_010153 |
| TCONS_00022006 | lncRNA | upstream | 461872 | 40082902 ~ 40114807 (+) | True | XLOC_010152 |
| TCONS_00022005 | lncRNA | upstream | 494623 | 40077514 ~ 40082056 (+) | True | XLOC_010151 |
| TCONS_00022007 | lncRNA | downstream | 287461 | 40873241 ~ 40893518 (+) | True | XLOC_010162 |
| TCONS_00021742 | lncRNA | downstream | 355957 | 40941737 ~ 40945757 (+) | False | XLOC_010163 |
| TCONS_00021743 | lncRNA | downstream | 355972 | 40941752 ~ 40943109 (+) | False | XLOC_010163 |
| TCONS_00022008 | lncRNA | downstream | 356099 | 40941879 ~ 40943999 (+) | True | XLOC_010163 |
| TCONS_00022009 | lncRNA | downstream | 450867 | 41036647 ~ 41054652 (+) | False | XLOC_010166 |
| TCONS_00020147 | mRNA | upstream | 6910 | 40560622 ~ 40569769 (+) | False | XLOC_010160 |
| TCONS_00020148 | mRNA | upstream | 6910 | 40563533 ~ 40569769 (+) | True | XLOC_010160 |
| TCONS_00020146 | mRNA | upstream | 34698 | 40508882 ~ 40541981 (+) | True | XLOC_010159 |
| TCONS_00020145 | mRNA | upstream | 112253 | 40463365 ~ 40464426 (+) | True | XLOC_010158 |
| TCONS_00020141 | mRNA | upstream | 232468 | 40340523 ~ 40344211 (+) | True | XLOC_010156 |
| TCONS_00020154 | mRNA | downstream | 368701 | 40954481 ~ 40955839 (+) | True | XLOC_010164 |
| TCONS_00020155 | mRNA | downstream | 429383 | 41015163 ~ 41030634 (+) | False | XLOC_010165 |
| TCONS_00020156 | mRNA | downstream | 430001 | 41015781 ~ 41021830 (+) | True | XLOC_010165 |
| TCONS_00020158 | mRNA | downstream | 474381 | 41060161 ~ 41103782 (+) | False | XLOC_010167 |
| TCONS_00020159 | mRNA | downstream | 481806 | 41067586 ~ 41103755 (+) | True | XLOC_010167 |
| TCONS_00020144 | other | upstream | 227725 | 40346595 ~ 40348954 (+) | True | XLOC_010157 |
| TCONS_00020142 | other | upstream | 229303 | 40346447 ~ 40347376 (+) | False | XLOC_010157 |
| TCONS_00020139 | other | upstream | 256449 | 40302791 ~ 40320230 (+) | True | XLOC_010153 |
| TCONS_00020136 | other | upstream | 392820 | 40183743 ~ 40183859 (+) | True | XLOC_010154 |
| TCONS_00020126 | other | upstream | 564688 | 40011869 ~ 40011991 (+) | True | XLOC_010148 |
| TCONS_00020157 | other | downstream | 456530 | 41042310 ~ 41054232 (+) | False | XLOC_010166 |
| TCONS_00020166 | other | downstream | 960983 | 41546763 ~ 41548437 (+) | True | XLOC_010175 |
| TCONS_00020194 | other | downstream | 2186932 | 42772712 ~ 42781394 (+) | False | XLOC_010194 |
| TCONS_00020198 | other | downstream | 2290666 | 42876446 ~ 42878011 (+) | True | XLOC_010197 |
| TCONS_00020200 | other | downstream | 2312649 | 42898429 ~ 42898510 (+) | False | XLOC_010198 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000016_00448107_00452861.mRNA | True | 1407 | mRNA | 0.47 | 9 | CI01000016 | 447858 ~ 452861 (-) |
