RNA id: TCONS_00020153


Basic Information

Item Value
RNA id TCONS_00020153
length 667
lncRNA type retained_intron
GC content 0.45
exon number 5
gene id XLOC_010161
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 40575742 ~ 40586793 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aatgtatCTGTTGTTCTAATAGCTGGGCCAGTTCTGATGATGTGTGGATAAAGATGCTGAACAAGGAGCTTAAGTATGTACACGACAAGAGCTTCATCCAGCAACATCCAGCTCTGCAGCCCAAAATGAGGGCCATTCTGCTGGACTGGCTTATGGAGGTCAGTGAAGTTTACACACTCCACCGGGAGACATTTTACTTGGCTCAGGACATCTTTGATCGCTTCATGCTCACTCAGAAAGACATTGGCAAAGATCAACTGCAGCTCATCGGCATAACCTCACTCTTCATAGCCTCAAAGATAGAGGAGATTTATCCACCAAAGCTCCAGGAGTTTGCTTATGTGACAGACGGGGCCTGCAACGAGGAGGAGATTCTTGCTAAAGAGCTTGTTATGCTGAAGGCCTTAAACTGGGATCTCTGTCCTGAGACAGTCATCTCATGGTTAAAGCTCTATTCTCAGGTGGACTCTTTGAAGGACGAAGCTAATTTCCTTATTCCTCAGTTCTCGCAGGAAACCTACATCCAAATCACACAGTTGTTGGATCTTTGCATTTTGGACATCAATTCTTTGGATTACCAGTATGGAGTCCTTGCTGCTGCTGCATTTTGTCACTTTACTTCATTTGAACTGGTCCATAAAGTATCAGGGCTCACATGGGACAGCCT

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0000082 G1/S transition of mitotic cell cycle biological_process
GO:0044772 mitotic cell cycle phase transition biological_process
GO:0000307 cyclin-dependent protein kinase holoenzyme complex cellular_component
GO:0005813 centrosome cellular_component
GO:0097134 cyclin E1-CDK2 complex cellular_component
GO:0097135 cyclin E2-CDK2 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9689 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in G1/S transition of mitotic cell cycle and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within regulation of cell cycle. Predicted to be part of cyclin E1-CDK2 complex and cyclin E2-CDK2 complex. Predicted to be active in centrosome; cytoplasm; and nucleus. Is expressed in brain; digestive system; head; and proliferative region. Human ortholog(s) of this gene implicated in castration-resistant prostate carcinoma. Orthologous to human CCNE2 (cyclin E2).

Ensembl:

ensembl_id ENSDART00000159889

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020143 lncRNA upstream 226422 40346484 ~ 40354078 (+) False XLOC_010157
TCONS_00020133 lncRNA upstream 426818 40131464 ~ 40153682 (+) False XLOC_010153
TCONS_00020135 lncRNA upstream 426818 40131580 ~ 40153682 (+) False XLOC_010153
TCONS_00022006 lncRNA upstream 465693 40082902 ~ 40114807 (+) True XLOC_010152
TCONS_00022004 lncRNA upstream 498444 40077311 ~ 40082056 (+) False XLOC_010151
TCONS_00022007 lncRNA downstream 290091 40873241 ~ 40893518 (+) True XLOC_010162
TCONS_00021742 lncRNA downstream 358587 40941737 ~ 40945757 (+) False XLOC_010163
TCONS_00021743 lncRNA downstream 358602 40941752 ~ 40943109 (+) False XLOC_010163
TCONS_00022008 lncRNA downstream 358729 40941879 ~ 40943999 (+) True XLOC_010163
TCONS_00022009 lncRNA downstream 453497 41036647 ~ 41054652 (+) False XLOC_010166
TCONS_00020147 mRNA upstream 10731 40560622 ~ 40569769 (+) False XLOC_010160
TCONS_00020148 mRNA upstream 10731 40563533 ~ 40569769 (+) True XLOC_010160
TCONS_00020146 mRNA upstream 38519 40508882 ~ 40541981 (+) True XLOC_010159
TCONS_00020145 mRNA upstream 116074 40463365 ~ 40464426 (+) True XLOC_010158
TCONS_00020140 mRNA upstream 235128 40340222 ~ 40345372 (+) False XLOC_010156
TCONS_00020154 mRNA downstream 371331 40954481 ~ 40955839 (+) True XLOC_010164
TCONS_00020155 mRNA downstream 432013 41015163 ~ 41030634 (+) False XLOC_010165
TCONS_00020156 mRNA downstream 432631 41015781 ~ 41021830 (+) True XLOC_010165
TCONS_00020158 mRNA downstream 477011 41060161 ~ 41103782 (+) False XLOC_010167
TCONS_00020159 mRNA downstream 484436 41067586 ~ 41103755 (+) True XLOC_010167
TCONS_00020144 other upstream 231546 40346595 ~ 40348954 (+) True XLOC_010157
TCONS_00020142 other upstream 233124 40346447 ~ 40347376 (+) False XLOC_010157
TCONS_00020139 other upstream 260270 40302791 ~ 40320230 (+) True XLOC_010153
TCONS_00020136 other upstream 396641 40183743 ~ 40183859 (+) True XLOC_010154
TCONS_00020126 other upstream 568509 40011869 ~ 40011991 (+) True XLOC_010148
TCONS_00020157 other downstream 459160 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020166 other downstream 963613 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020194 other downstream 2189562 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020198 other downstream 2293296 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020200 other downstream 2315279 42898429 ~ 42898510 (+) False XLOC_010198

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU424532 False 1304 TUCP 0.50 11 NC_047619.1 344118 ~ 348676 (+)