RNA id: TCONS_00020159


Basic Information

Item Value
RNA id TCONS_00020159
length 3738
RNA type mRNA
GC content 0.55
exon number 22
gene id XLOC_010167
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41060161 ~ 41103782 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACGGTGAGAGAGCGGCTTCGGCAGAACATCTCGGCCGCCTTCTACCGGCACGGCCTGCTATGCGCCTCATACCCGGTTCCCATCATTCTCTTCACCTCTGCCAGCATCCTGACCTGCTGTTACCCTCTGCTGAAGCTGCCTCTACCAGGAACGGGGCCTGTGGAGTTCACCACTGGAGTACGAGATTACTCGATCCCATCCCATGAGTCTCAGGGGGACCTGTCAGAGCGACCGGATTGGTATCGGGGACCTCCAGTGGCCTACATCCAGCAGGTGTTGGTCAAGGCAGCGGTTTCACCATGGGGCAACAGTTTGGTCCCTGTGGACGTGTTTCGCTCTCCTCTTGGTCGAGTTTTCAGCCTTTTGGATGAGATCAGAAACCACGTTTACACGGACAGAAGTTTGGAGGCGCTGTGTTTGCAGGTGACAGATTTGTTGCCAGGTTTGCGGCGCATGCAGGCGGTCCTTCCAGAGCACGGCTGTCTGCTGGTGTCCCCTGGCAACTATTGGCAGAACCGGCGTGACCTGTTTGATGCTGATCCAGACCTCCTGAAGACAGTCCACCAACATGAACCCAAAGGCCTTCATACCTCAGCCACTCTTAGAGATTTACTCTTTGGCGTCCCAGGGAAGCAGACGGGTGTTAGCTTGTATAGCAAGAAGAGAGTGGTGACATACACCGTCACAATTGCACTAAGCTCCTATGATGCAAGGTTTGTAGGCAGTCTTCGAGCACGTCTGAAGCAGCTTCATCCATCAGCAAACTGTACTCTGCGTGAAGACCACATGGTGCACGTCCATTTTAAAGAAGAGATTGGCATCGCTGAGCTCATCCCTTTAGTCACAACCTACATCATCTTGTTTGCTTATATCTACTTCTCCACACGAAAGATTGACATGGTGAGGTCAAAATGGGGTTTGGCGCTGGCTGCGGTGGTGACGGTCCTCAGCTCTCTACTCATGTCAGTGGGACTCTGCACCTTGTTTGGCCTCACACCTACACTGAACGGAGGGGAAATCTTCCCCTACCTTGTGGTGGTAATTGGTTTGGAGAATGTTCTAGTCCTCACCAAGTCTGTCGTGTCAACGCCTGTCGACCTTGAAGTCAAACTGCGTATCGCTCAAGGTCTGAGCAACGAGAGCTGGTCAATCATGAAGAATATGGCCACTGAGCTGTGCATCATCCTCATTGGATACTTCACATTTGTCCCAGCTATTCAGGAGTTCTGTCTGTTTGCTGTGGTGGGTCTGGTGTCCGATTTCTTCCTTCAGATGTTTTTCTTCACCACTGTGCTGTCTATTGACATCCGCCGCATGGAGTTGGCTGATCTCAACAGACGTCTGCCAGCAGAAGCAGGGATGCCTCCTCCTAAACCGGGCACTTTACGTCCCCGGGAGACGCCTCCACCACCTCGTCCCTCACCACACACCATCACTCTGCAGACTCCAGCGTTTCGCAACCTCCGCTTGCCCAAGAGGCTGAGGGTGGTGTATTTCTTAGCCCGCACTCGCCTGGCACAGCGGATTATTATGGTTGGCACTGTAATCTGGATTGGAATCTTGGTCTACACTGACCCTGCTGGTCTGAGGACTTTCCTTGCAGCCCAAGTATCCGAGCAGAGTCCTCTTGGAGAGGCAGGGCTTCCTCCTCACCTGGGTGTTGCTCCAGTATTTCCCGGCGGACACCCGACCAGCACACTGAGCGTCCTCCCTGCCCCTGAACCCACTCCTCTTCCCGAAAACCAGTCCCAGGGCCACCGAGCAGCCCGTCCAGGAGTCGCCCCCGTCTCAAGCCCTCAGATCACCTGGGGCTCCGAAGATGAGGAGCTGTGGAGGAGGCTTTCTTTCCGCCACTGGCCCTCACTCTTCAGCTATTACAACATCACTCTTGCAAAAAGGTACATCAGCATTCTTCCAGTCATCCCCGTGACGCTTCATCTGAGCCCACAGGAGGCCATAGACACTCGGCACCCGCAGGACACACAGCacgctcctcctcctcctcccagcATCAAGACTTCTGATCTGCAGACGGACCTCACACTCTACAAagtGGCAGCTCTTGGGCttttcgctggtgttttgctgGTGCTCTTACTCTTCTGTCTGTATCGTGTGCTCTGCCCTCGAAACTATGGGCAGAACGGTGTGCCCCATGGCCGTCGTCGTCGTGGAGACCTGCCCTGCGATGAGTACGGATATTCACCCCCCATCAGTGAAATTTCCCCTCTGCTGCTGAGAGGTCACAGTATGGACATTGAGTGTCTGGCCAGTGATGGCATGCTGCTGGCCAGCTGTTGCCTGGCAGGACAGATCCGTGTATGGGACGCACAGACTGGAGACTGTCTCACTGTTATACCCAACAAAGGCCTGCGCAGGAGCAGCAGCAACGGTTGTTGGGAGCACCGTGATGGCTGGGATCACATCAGTGCTTTTGAAGTAGAGGGAATAGCTACAGACTTTCGAGAACCAGGAGGAGCGATGGGAGGCCCAGATGTAGATATTTTCGCTATAAGGAGGAGGACCACCCCTGCTCGTCCTGCACTGTTTGGAGACCAACCAGACCTCACGCCTCTCATCGACACCAACTTCGGGGCGCTGCCTCCATCTCAGGCCCTGAGCGGCTCTGGCTTTGACTTTGGGAGTTTGGTGGAGAAAGCGTACCAGGAGCATGAGCCCTCTCCAGTGTTGGTCTTCCCTCCGTCTCCTCCAGCCTCACAGCAGAGACGCCGCAGCCTCGGGGATCAGCCGGTCCTGCCTCCTGAGCTCCCTCCACAGAGCAGTGCAGACTGGGACAGCTCAGTGTGGGCCATGGAGCTCAGGGGGAACCTCATTGCTACGGGCCGCAGCACTGGAAAATTGGAGCTGTGGGATGCAGTAGAGGGATCTTTACGGTGCAGTAATGAAGATGGAGTTTCTGGAATTACAGCCTTGGCTTTTCTTAACAACAGAATTGTTGCAGCCCGATTAAATGGCTCACTGGATTTTTTCACAGTGGAGATCAACAAGCCACTCGGGTTGCTGCAATATCGAGGACCACCAGGCCGAGGTAGTCTACCACCGTCCCCCTGTTACAGCAGCGAGGATGTAATCAGCTGTCATCTCACTCGCTCAGTACAGTGTGCCCATCAGAAACCCATCACTGTGCTGAAAGCTGCTGCTGGCAGAGTGGTCACCGGCAGCCAGGACCATACAGTCAGGGTGTATCGTTTGGAGGATTCTTGTTGCCTCTTCACCCTGCAGGGCCACTCAGGTGGTATAACCGCCATCTACATAGACCAGACTATGGTTCTAGCCAGTGGAGGCCAAGATGGAGCCATCTGCGTGTGGGATGTCCTAACAGGCAGCCGGGTGAGCCACGTGTACGGTCATCGTGGTGATGTCACCTCACTGGTTTGCACAACATCCTGCATCATTAGCAGCGGTTTGGATGACCTCATTTGCATTTGGGACCGAAGCACAGGCATTAAGCTGTACTCAATACAACAGGAGGTGGGATGTGGGGCCAGTCTGGGGGTGATTTCTGAAAATCTGCTGGTGACCGGAGGACAAGGCTGCGTGTCATTTTGGGACCTGAACTATGGGGACCTGCTGCAGACGGTGTACCTGGGGCCGAGCAGTGAAGGTCAGAGCGTCCGGCAGCTCCTGGTTTTGGACAACGCCGCCATCATCTGTGACTTTGGTAGCGAGCTCAGTCTGGTCTATGTGCCCTCTGTTCTGGAGAAGCTGgactga

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0032933 SREBP signaling pathway biological_process
GO:0019915 lipid storage biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0032934 sterol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040107-41 Predicted to enable sterol binding activity. Acts upstream of or within lipid metabolic process and lipid storage. Predicted to be located in ER to Golgi transport vesicle membrane; Golgi membrane; and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human SCAP (SREBF chaperone).

Ensembl:

ensembl_id ENSDART00000181876

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022009 lncRNA upstream 12934 41036647 ~ 41054652 (+) False XLOC_010166
TCONS_00022010 lncRNA upstream 12934 41053252 ~ 41054652 (+) True XLOC_010166
TCONS_00021742 lncRNA upstream 121829 40941737 ~ 40945757 (+) False XLOC_010163
TCONS_00021744 lncRNA downstream 25309 41129064 ~ 41129320 (+) True XLOC_010168
TCONS_00021746 lncRNA downstream 38904 41142659 ~ 41144116 (+) False XLOC_010170
TCONS_00021745 lncRNA downstream 38904 41142659 ~ 41144116 (+) False XLOC_010170
TCONS_00021747 lncRNA downstream 38904 41142659 ~ 41148163 (+) True XLOC_010170
TCONS_00020164 lncRNA downstream 361756 41465511 ~ 41473318 (+) True XLOC_010173
TCONS_00020155 mRNA upstream 36952 41015163 ~ 41030634 (+) False XLOC_010165
TCONS_00020156 mRNA upstream 45756 41015781 ~ 41021830 (+) True XLOC_010165
TCONS_00020154 mRNA upstream 111747 40954481 ~ 40955839 (+) True XLOC_010164
TCONS_00020152 mRNA upstream 480793 40576680 ~ 40586793 (+) False XLOC_010161
TCONS_00020151 mRNA upstream 481806 40576679 ~ 40585780 (+) False XLOC_010161
TCONS_00020160 mRNA downstream 31263 41135018 ~ 41136139 (+) True XLOC_010169
TCONS_00020161 mRNA downstream 59099 41162854 ~ 41169589 (+) True XLOC_010171
TCONS_00020162 mRNA downstream 68194 41171949 ~ 41293417 (+) False XLOC_010172
TCONS_00020163 mRNA downstream 189413 41293168 ~ 41296829 (+) True XLOC_010172
TCONS_00020165 mRNA downstream 413433 41517188 ~ 41521289 (+) True XLOC_010174
TCONS_00020157 other upstream 13354 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020150 other upstream 481810 40576679 ~ 40585776 (+) False XLOC_010161
TCONS_00020144 other upstream 718632 40346595 ~ 40348954 (+) True XLOC_010157
TCONS_00020142 other upstream 720210 40346447 ~ 40347376 (+) False XLOC_010157
TCONS_00020139 other upstream 747356 40302791 ~ 40320230 (+) True XLOC_010153
TCONS_00020166 other downstream 443008 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020194 other downstream 1668957 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020198 other downstream 1772691 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020200 other downstream 1794674 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020214 other downstream 3501571 44605326 ~ 44605440 (+) True XLOC_010211

Expression Profile

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