RNA id: TCONS_00021745


Basic Information

Item Value
RNA id TCONS_00021745
length 924
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id XLOC_010170
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41142659 ~ 41148163 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAACGgtaaactgatcaaacagacaaacCCAATCCTTGTCTTAAACAACATCACTGCTGAAGACTCTGGAAATTACTCTTGTTCTTTGAGGAAATTTACAAACACTTTATCTGGAGAAAGTATGTAGAACTTAGAATATATTAACCTTTTCATTTTTATATCAGATTCGCTAAATGGCAGCTGTATTACATGCACACACGTTTTGTTGTCTTCAACAGATGAGTCTCTTCTGATTATTGTAGTGTCTTCAGTATCGCCTGTGTTCATCATCATTGCAGCTGTGATTCTTATAAGAAGAAGGAAAGCAGCAAAAGAAAGAGAAGAACCCATGGATTCTCTTTATGCCTCGCTACAAATaactGCTGAAACTCAAGCATCAGCAGTCTACTCAAGCATACAAGATATACTGAAGGAGTGACAAAAGGATGAAGTGCAGCTTAATATAGATACAGATGTCAATATTAAACACAAGAAGCGAGCAATTGATTGCTGCGGTCAATTTTTGTCAGTGACTGCATTTGTTATTTTCAGTCTGAGCTGTAGTTTTGAAGATGATGAGGAACATTTCATCATATGTCAGTTTTATCAATTGCAAATGTGAGTTTGAAAGTGATGTCAGACACAGAACATGtttcctttatttaatttaaataatgttgttCATCAGATGTGGATTTTAATGTAACAGATGTTAAACTGCATGTCAATAGCTTGTGAAAGACCTTTATGTGATATAATTGCTAATAGTTAATGTTTTATGCAGTTTTAATGGCAAtttattgaaaaagaaaaaaacaaagctaGTATTTTTGTACTTCCGTAGgatatgtatgtttgtatattgTAGTGCATAATGTTGATGGAAGCTTTGTAAATGTTAATAacctattttttaattaattgttaataaaCGTAATTTTGTG

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048739 cardiac muscle fiber development biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0048747 muscle fiber development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006638 neutral lipid metabolic process biological_process
GO:0006639 acylglycerol metabolic process biological_process
GO:0006642 triglyceride mobilization biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0042440 pigment metabolic process biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0036088 D-serine catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:0014904 myotube cell development biological_process
GO:0045214 sarcomere organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0044248 cellular catabolic process biological_process
GO:0046144 D-alanine family amino acid metabolic process biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process
GO:0046436 D-alanine metabolic process biological_process
GO:0055130 D-alanine catabolic process biological_process
GO:0044872 lipoprotein localization biological_process
GO:0003013 circulatory system process biological_process
GO:0061061 muscle structure development biological_process
GO:0070178 D-serine metabolic process biological_process
GO:0042953 lipoprotein transport biological_process
GO:0005764 lysosome cellular_component
GO:0005773 vacuole cellular_component
GO:0000323 lytic vacuole cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0005576 extracellular region cellular_component
GO:0032994 protein-lipid complex cellular_component
GO:1990777 lipoprotein particle cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0034358 plasma lipoprotein particle cellular_component
GO:0034359 mature chylomicron cellular_component
GO:0034361 very-low-density lipoprotein particle cellular_component
GO:0042627 chylomicron cellular_component
GO:0034362 low-density lipoprotein particle cellular_component
GO:0034385 triglyceride-rich plasma lipoprotein particle cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0120013 lipid transfer activity molecular_function
GO:0120015 sterol transfer activity molecular_function
GO:0120020 cholesterol transfer activity molecular_function
GO:0070325 lipoprotein particle receptor binding molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0050750 low-density lipoprotein particle receptor binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021744 lncRNA upstream 13339 41129064 ~ 41129320 (+) True XLOC_010168
TCONS_00022009 lncRNA upstream 88007 41036647 ~ 41054652 (+) False XLOC_010166
TCONS_00022010 lncRNA upstream 88007 41053252 ~ 41054652 (+) True XLOC_010166
TCONS_00022008 lncRNA upstream 198660 40941879 ~ 40943999 (+) True XLOC_010163
TCONS_00021743 lncRNA upstream 199550 40941752 ~ 40943109 (+) False XLOC_010163
TCONS_00020164 lncRNA downstream 321395 41465511 ~ 41473318 (+) True XLOC_010173
TCONS_00022011 lncRNA downstream 693175 41837291 ~ 41839073 (+) True XLOC_010179
TCONS_00020174 lncRNA downstream 729718 41873834 ~ 41889297 (+) False XLOC_010180
TCONS_00020182 lncRNA downstream 922466 42066582 ~ 42073705 (+) True XLOC_010183
TCONS_00022012 lncRNA downstream 946190 42090306 ~ 42096260 (+) True XLOC_010184
TCONS_00020160 mRNA upstream 6520 41135018 ~ 41136139 (+) True XLOC_010169
TCONS_00020158 mRNA upstream 38877 41060161 ~ 41103782 (+) False XLOC_010167
TCONS_00020159 mRNA upstream 38904 41067586 ~ 41103755 (+) True XLOC_010167
TCONS_00020155 mRNA upstream 112025 41015163 ~ 41030634 (+) False XLOC_010165
TCONS_00020161 mRNA downstream 18738 41162854 ~ 41169589 (+) True XLOC_010171
TCONS_00020162 mRNA downstream 27833 41171949 ~ 41293417 (+) False XLOC_010172
TCONS_00020163 mRNA downstream 149052 41293168 ~ 41296829 (+) True XLOC_010172
TCONS_00020165 mRNA downstream 373072 41517188 ~ 41521289 (+) True XLOC_010174
TCONS_00020167 mRNA downstream 426537 41570653 ~ 41579815 (+) True XLOC_010176
TCONS_00020157 other upstream 88427 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020150 other upstream 556883 40576679 ~ 40585776 (+) False XLOC_010161
TCONS_00020144 other upstream 793705 40346595 ~ 40348954 (+) True XLOC_010157
TCONS_00020142 other upstream 795283 40346447 ~ 40347376 (+) False XLOC_010157
TCONS_00020139 other upstream 822429 40302791 ~ 40320230 (+) True XLOC_010153
TCONS_00020166 other downstream 402647 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020194 other downstream 1628596 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020198 other downstream 1732330 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020200 other downstream 1754313 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020214 other downstream 3461210 44605326 ~ 44605440 (+) True XLOC_010211

Expression Profile

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