Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00020161 |
| length | 1323 |
| RNA type | mRNA |
| GC content | 0.38 |
| exon number | 7 |
| gene id | XLOC_010171 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 41162854 ~ 41169589 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-080303-5 | Predicted to be located in membrane. Predicted to be integral component of membrane. |
| ensembl_id | ENSDART00000063708 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00021747 | lncRNA | upstream | 14691 | 41142659 ~ 41148163 (+) | True | XLOC_010170 |
| TCONS_00021746 | lncRNA | upstream | 18738 | 41142659 ~ 41144116 (+) | False | XLOC_010170 |
| TCONS_00021745 | lncRNA | upstream | 18738 | 41142659 ~ 41144116 (+) | False | XLOC_010170 |
| TCONS_00021744 | lncRNA | upstream | 33534 | 41129064 ~ 41129320 (+) | True | XLOC_010168 |
| TCONS_00022009 | lncRNA | upstream | 108202 | 41036647 ~ 41054652 (+) | False | XLOC_010166 |
| TCONS_00020164 | lncRNA | downstream | 295922 | 41465511 ~ 41473318 (+) | True | XLOC_010173 |
| TCONS_00022011 | lncRNA | downstream | 667702 | 41837291 ~ 41839073 (+) | True | XLOC_010179 |
| TCONS_00020174 | lncRNA | downstream | 704245 | 41873834 ~ 41889297 (+) | False | XLOC_010180 |
| TCONS_00020182 | lncRNA | downstream | 896993 | 42066582 ~ 42073705 (+) | True | XLOC_010183 |
| TCONS_00022012 | lncRNA | downstream | 920717 | 42090306 ~ 42096260 (+) | True | XLOC_010184 |
| TCONS_00020160 | mRNA | upstream | 26715 | 41135018 ~ 41136139 (+) | True | XLOC_010169 |
| TCONS_00020158 | mRNA | upstream | 59072 | 41060161 ~ 41103782 (+) | False | XLOC_010167 |
| TCONS_00020159 | mRNA | upstream | 59099 | 41067586 ~ 41103755 (+) | True | XLOC_010167 |
| TCONS_00020155 | mRNA | upstream | 132220 | 41015163 ~ 41030634 (+) | False | XLOC_010165 |
| TCONS_00020156 | mRNA | upstream | 141024 | 41015781 ~ 41021830 (+) | True | XLOC_010165 |
| TCONS_00020162 | mRNA | downstream | 2360 | 41171949 ~ 41293417 (+) | False | XLOC_010172 |
| TCONS_00020163 | mRNA | downstream | 123579 | 41293168 ~ 41296829 (+) | True | XLOC_010172 |
| TCONS_00020165 | mRNA | downstream | 347599 | 41517188 ~ 41521289 (+) | True | XLOC_010174 |
| TCONS_00020167 | mRNA | downstream | 401064 | 41570653 ~ 41579815 (+) | True | XLOC_010176 |
| TCONS_00020168 | mRNA | downstream | 498885 | 41668474 ~ 41674998 (+) | False | XLOC_010177 |
| TCONS_00020157 | other | upstream | 108622 | 41042310 ~ 41054232 (+) | False | XLOC_010166 |
| TCONS_00020150 | other | upstream | 577078 | 40576679 ~ 40585776 (+) | False | XLOC_010161 |
| TCONS_00020144 | other | upstream | 813900 | 40346595 ~ 40348954 (+) | True | XLOC_010157 |
| TCONS_00020142 | other | upstream | 815478 | 40346447 ~ 40347376 (+) | False | XLOC_010157 |
| TCONS_00020139 | other | upstream | 842624 | 40302791 ~ 40320230 (+) | True | XLOC_010153 |
| TCONS_00020166 | other | downstream | 377174 | 41546763 ~ 41548437 (+) | True | XLOC_010175 |
| TCONS_00020194 | other | downstream | 1603123 | 42772712 ~ 42781394 (+) | False | XLOC_010194 |
| TCONS_00020198 | other | downstream | 1706857 | 42876446 ~ 42878011 (+) | True | XLOC_010197 |
| TCONS_00020200 | other | downstream | 1728840 | 42898429 ~ 42898510 (+) | False | XLOC_010198 |
| TCONS_00020214 | other | downstream | 3435737 | 44605326 ~ 44605440 (+) | True | XLOC_010211 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | TU160731 | True | 221 | lncRNA | 0.40 | 2 | CI01000027 | 4208654 ~ 4209445 (-) |
