RNA id: TCONS_00020165


Basic Information

Item Value
RNA id TCONS_00020165
length 1062
RNA type mRNA
GC content 0.51
exon number 3
gene id XLOC_010174
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41517188 ~ 41521289 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAGATCTGCAATGAACCTGCATCCCTTCAGTAAAACTCTGGGTCTGCTGATGGTCCTTCACTCTGCAGctgtggccaAAGATGATGATGGCTGGTTAATGAAGGCTCCCGCTGAGGTGCGGGGGATAGAGGGTTACCCGGTGGTGCTGCCCTGCTCCTTCACCCACCCGCACCACACTCATCCCTCCTCCATGTATGTGTCCTGGACTCTGGGTCACGGTCGGGCCGCGGTGCTGCTGTTCCGCTGCTCGAGCCTCAACAACAGCCAGCTGTGCCAGTCAAAACCCAACCAGGACCAGCGCTACCGCCTGGAAGGAAACCACCGAAACCATGACATCTCACTGCGGGTCAACAGCCTGACCCTTAAGGACAGCGGCCGCTATTACTGCCGTGTGGAGCTGCCAGGACACCAGCATACAAGCTTCGAGAACACACTAGGAACCCGTCTACGAGTggaggCTGCACCACGAATCCTGAGTTTGTCAGCTGAGGGGAGCGAAATATCTGGCTTTAAAGCAGTGTGTGAGGTTCAGGGTTCCCCCCTTCCTGATGTTCAATGGATTGCACCAAATGGAGTTCTGGATGGAGACGCTGCATTCCCACTTTCTCAAGACACTGCAGGACAATACCGTGCTTCAAGTCAACTGCTGGACGTCCAGCCAGGAGGTCAGTACATCTGTGCGGCTTCAAACTCTCTGGGGAAAGATCAAGCCACACTCTACCTTCTGTGCCCGAGCCCTGAGAAGTTAAGCGCAAGGAGCTCATTCTCTCTTGTGGTGCTGCTTCTTGCTCTGGCACTCGCTACCAAACTGATTTTGGCTCTGGGTGTGGGAGCTTGGCTGCTCAAAAAGACGTTTAGTGGAGCAGAGCACTAAAAAAAACGACAAAACACTGGTCTTCAAAACTGTTTCTCAAGGCTTTTGTCTTGTTAATAATGTATAGCCTAAAAATAAATCTTCCTCTTTTGAGATGAGACAAGATTACGACTCTGTCTGACCTGACGGGATAATATAATCCCTTACTGTGTGAACCTGAAATGGCtaactattaaaatgttctta

Function

GO:

id name namespace
GO:2001204 regulation of osteoclast development biological_process
GO:0045124 regulation of bone resorption biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-120 Predicted to be involved in regulation of actin cytoskeleton organization; regulation of bone resorption; and regulation of osteoclast development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human SIGLEC15 (sialic acid binding Ig like lectin 15).

Ensembl:

ensembl_id ENSDART00000049976

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020164 lncRNA upstream 43870 41465511 ~ 41473318 (+) True XLOC_010173
TCONS_00021747 lncRNA upstream 369025 41142659 ~ 41148163 (+) True XLOC_010170
TCONS_00021746 lncRNA upstream 373072 41142659 ~ 41144116 (+) False XLOC_010170
TCONS_00021745 lncRNA upstream 373072 41142659 ~ 41144116 (+) False XLOC_010170
TCONS_00021744 lncRNA upstream 387868 41129064 ~ 41129320 (+) True XLOC_010168
TCONS_00022011 lncRNA downstream 316002 41837291 ~ 41839073 (+) True XLOC_010179
TCONS_00020174 lncRNA downstream 352545 41873834 ~ 41889297 (+) False XLOC_010180
TCONS_00020182 lncRNA downstream 545293 42066582 ~ 42073705 (+) True XLOC_010183
TCONS_00022012 lncRNA downstream 569017 42090306 ~ 42096260 (+) True XLOC_010184
TCONS_00021748 lncRNA downstream 815956 42337245 ~ 42337549 (+) True XLOC_010186
TCONS_00020163 mRNA upstream 220359 41293168 ~ 41296829 (+) True XLOC_010172
TCONS_00020162 mRNA upstream 223771 41171949 ~ 41293417 (+) False XLOC_010172
TCONS_00020161 mRNA upstream 347599 41162854 ~ 41169589 (+) True XLOC_010171
TCONS_00020160 mRNA upstream 381049 41135018 ~ 41136139 (+) True XLOC_010169
TCONS_00020158 mRNA upstream 413406 41060161 ~ 41103782 (+) False XLOC_010167
TCONS_00020167 mRNA downstream 49364 41570653 ~ 41579815 (+) True XLOC_010176
TCONS_00020168 mRNA downstream 147185 41668474 ~ 41674998 (+) False XLOC_010177
TCONS_00020169 mRNA downstream 147275 41668564 ~ 41681746 (+) True XLOC_010177
TCONS_00020170 mRNA downstream 196024 41717313 ~ 41732459 (+) False XLOC_010178
TCONS_00020171 mRNA downstream 196026 41717315 ~ 41730480 (+) True XLOC_010178
TCONS_00020157 other upstream 462956 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020150 other upstream 931412 40576679 ~ 40585776 (+) False XLOC_010161
TCONS_00020144 other upstream 1168234 40346595 ~ 40348954 (+) True XLOC_010157
TCONS_00020142 other upstream 1169812 40346447 ~ 40347376 (+) False XLOC_010157
TCONS_00020139 other upstream 1196958 40302791 ~ 40320230 (+) True XLOC_010153
TCONS_00020166 other downstream 25474 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020194 other downstream 1251423 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020198 other downstream 1355157 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020200 other downstream 1377140 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020214 other downstream 3084037 44605326 ~ 44605440 (+) True XLOC_010211

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_04008272_04011121.mRNA True 2463 mRNA 0.41 3 CI01000027 4008180 ~ 4012622 (-)