RNA id: TCONS_00020168


Basic Information

Item Value
RNA id TCONS_00020168
length 590
RNA type mRNA
GC content 0.44
exon number 7
gene id XLOC_010177
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41668474 ~ 41681746 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTCTGACAGACGAGCAGCGCCGCATAGTGGAGTTTGAGGGTTCCTGTTACCAGTGGCAACTGATCAAACATCTCCGCACTGTAAACATCCACATTTAACCAAAATGACGTGTCTTTATTAGGACAAAAATAACACTCAAGTGGTTTTGTAAACATGACCTCCCCGCTGTCTATCCTGAGGAAGAACAGACGAGCTCCTTTACCAGACCTACACACTGATGGGGAGAGAAAGCCTCACAAAGAAAGGTCAGACAGCGACTATGAAGAGAAACTATTCCAAGACATTTTCCCACAAAACCAGCCAGTGCCACGTGTTCCGGATCATCTTTCCACTTTAAGATCTAAGTTCATGCAAAAGAAGAAGGCAAAAGCAGCTGTGCCGAGTGATTTTGAACTGATGTCAAGTATGATGCAGAAGATCTGTCACCTAGAGAGAAAAGTGAAAACTCAGGCTGTGGATATCGAGCAGAAGGCGAGAAGAATAGCAGTTCTGGAAGAGAAACTGAATATCCTGCGAGAGGCAAAAGTTTTAGAGGAATCTGCAAGTAATGAAAACCAAGATGAAGGATTGGTTCAGTTCTGCCTCAAG

Function

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0043130 ubiquitin binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-100922-125 Predicted to enable ubiquitin binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Orthologous to human UBXN11 (UBX domain protein 11).

Ensembl:

ensembl_id ENSDART00000141293

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020164 lncRNA upstream 195156 41465511 ~ 41473318 (+) True XLOC_010173
TCONS_00021747 lncRNA upstream 520311 41142659 ~ 41148163 (+) True XLOC_010170
TCONS_00021746 lncRNA upstream 524358 41142659 ~ 41144116 (+) False XLOC_010170
TCONS_00021745 lncRNA upstream 524358 41142659 ~ 41144116 (+) False XLOC_010170
TCONS_00021744 lncRNA upstream 539154 41129064 ~ 41129320 (+) True XLOC_010168
TCONS_00022011 lncRNA downstream 162293 41837291 ~ 41839073 (+) True XLOC_010179
TCONS_00020174 lncRNA downstream 198836 41873834 ~ 41889297 (+) False XLOC_010180
TCONS_00020182 lncRNA downstream 391584 42066582 ~ 42073705 (+) True XLOC_010183
TCONS_00022012 lncRNA downstream 415308 42090306 ~ 42096260 (+) True XLOC_010184
TCONS_00021748 lncRNA downstream 662247 42337245 ~ 42337549 (+) True XLOC_010186
TCONS_00020167 mRNA upstream 88659 41570653 ~ 41579815 (+) True XLOC_010176
TCONS_00020165 mRNA upstream 147185 41517188 ~ 41521289 (+) True XLOC_010174
TCONS_00020163 mRNA upstream 371645 41293168 ~ 41296829 (+) True XLOC_010172
TCONS_00020162 mRNA upstream 375057 41171949 ~ 41293417 (+) False XLOC_010172
TCONS_00020161 mRNA upstream 498885 41162854 ~ 41169589 (+) True XLOC_010171
TCONS_00020170 mRNA downstream 42315 41717313 ~ 41732459 (+) False XLOC_010178
TCONS_00020171 mRNA downstream 42317 41717315 ~ 41730480 (+) True XLOC_010178
TCONS_00020172 mRNA downstream 151586 41826584 ~ 41838768 (+) False XLOC_010179
TCONS_00020173 mRNA downstream 198710 41873708 ~ 41897579 (+) False XLOC_010180
TCONS_00020175 mRNA downstream 198836 41873834 ~ 41897580 (+) False XLOC_010180
TCONS_00020166 other upstream 120037 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020157 other upstream 614242 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020150 other upstream 1082698 40576679 ~ 40585776 (+) False XLOC_010161
TCONS_00020144 other upstream 1319520 40346595 ~ 40348954 (+) True XLOC_010157
TCONS_00020142 other upstream 1321098 40346447 ~ 40347376 (+) False XLOC_010157
TCONS_00020194 other downstream 1097714 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020198 other downstream 1201448 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020200 other downstream 1223431 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020214 other downstream 2930328 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020216 other downstream 3008067 44683065 ~ 44687935 (+) True XLOC_010212

Expression Profile

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