RNA id: TCONS_00020171


Basic Information

Item Value
RNA id TCONS_00020171
length 1364
RNA type mRNA
GC content 0.52
exon number 9
gene id XLOC_010178
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41717313 ~ 41732459 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATCGGCGGTGGCACGCTGGGGGCAGGCGACTGGCACAGAGATGCATTTTCCTGTATGATTAATCTTAAAGAGTTGATTTTGTGAATGATTGCACGCCGGTGCCAGCACAATAGATTGCAATGGCACCGGGTTGGCAAGAGATCGCGTCGCAGCATGTGGAGCAGATAACGGGATATGTCAGAGAAAGCCTGTCCACCGGCCTCGTCTATCTGAAGTCTGAGCTGGGAATAGACTTGGGCTTGAATCCTGATCTCTGCGCTCCATGGCTGCTGCTTTTAACGGCCTGGGCCGGTCTGGTTCTCCTGCTGGTCTTATGGGTGTCCGTTTGTCGCGGTTTCTCCAAAAGACTCGCAGGGACAGAGACCGGAGACTCCGCCGAAAATACGGGTCCAGCGCAACCGGTGAAAAAGGCAGATGAGCCCAAGAGGAGGAACAGAAAGAAGAATGCAGAGAAGAAAGCACAGAGGAATGGACTTGCTGTTGAACCACAGGAGGAGGTTAAAACGGCAGACGATCAAGAACTAGCAGAAGTGAGGGCTGACAAGGGAAAGAAGAATAAGAAAAAGACAAAAGCTTCTGCAAAAGAGAAAAAATCCTCCACATCTGTTGACGGCAAAGAGCCTGATGAAGcGGTCGGGAACATGAGTGTGATGGTAAATCTGGCAGGTACCTGGGAGACCAAGGTCAGTAACCGAGAGAAGCGTCAACAGCGGCGGAAGGACAAGGCTCCAGATGACGAGTCCGGCAGCCCGGTACCATCAGCAGCTTCCGGTGCCACGGAGCAGCTCCAAACCACCCTAGAAGAAGCAGAAACTACCATCACCTCTGCTGTTTCTACACCTCCGGTCCAAAGAGTAGTGGAGGTGACTCCGTGTTGGGAAGAAGTGCTGACTGTAAATGGCTCTGGCTGGAGTGATCTGGGTCTGCAGCTTCCTTCTCACATGACCAGTGTTCAGACTGAAAGCTGGACCAGTATGACCGTCCCGACTGAGCGTCAGACCAGCGAACCATCTGTCTGGCCACAAGATATGGAAGGTTCATGGACTATTGTGGATAGACCTAATATTCCTGTTACATTCAGTGGATTGCCTGCTGTGCCTGACCTAAGTTGGAGCGCTCCGCCTGCTGTGCCCGTGGATGATGAGTGGTCCGGAATAAAAAGCTCATCTGCAGACCCATCGTGTGACTGGAACGCTCCATCAGAGGAGTGGGGGAACTATATTGAGCAGCAGCCTGTGAGCGCGGCACCGCTGGAGCAACCAGGCCCTGAAGTTCTGCAGGAATCTGATGATGACAAGGATAAAGATGAATCTGGCACCCCTGGTAGCGGTAAAgctaagaagaagaaaaagaagaagaagaa

Function

GO:

id name namespace
GO:0045766 positive regulation of angiogenesis biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090929-2 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of apoptotic process; positive regulation of I-kappaB kinase/NF-kappaB signaling; and positive regulation of angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human MTDH (metadherin).

Ensembl:

ensembl_id ENSDART00000075937

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020164 lncRNA upstream 243997 41465511 ~ 41473318 (+) True XLOC_010173
TCONS_00021747 lncRNA upstream 569152 41142659 ~ 41148163 (+) True XLOC_010170
TCONS_00021746 lncRNA upstream 573199 41142659 ~ 41144116 (+) False XLOC_010170
TCONS_00021745 lncRNA upstream 573199 41142659 ~ 41144116 (+) False XLOC_010170
TCONS_00021744 lncRNA upstream 587995 41129064 ~ 41129320 (+) True XLOC_010168
TCONS_00022011 lncRNA downstream 106811 41837291 ~ 41839073 (+) True XLOC_010179
TCONS_00020174 lncRNA downstream 143354 41873834 ~ 41889297 (+) False XLOC_010180
TCONS_00020182 lncRNA downstream 336102 42066582 ~ 42073705 (+) True XLOC_010183
TCONS_00022012 lncRNA downstream 359826 42090306 ~ 42096260 (+) True XLOC_010184
TCONS_00021748 lncRNA downstream 606765 42337245 ~ 42337549 (+) True XLOC_010186
TCONS_00020169 mRNA upstream 35569 41668564 ~ 41681746 (+) True XLOC_010177
TCONS_00020168 mRNA upstream 42317 41668474 ~ 41674998 (+) False XLOC_010177
TCONS_00020167 mRNA upstream 137500 41570653 ~ 41579815 (+) True XLOC_010176
TCONS_00020165 mRNA upstream 196026 41517188 ~ 41521289 (+) True XLOC_010174
TCONS_00020163 mRNA upstream 420486 41293168 ~ 41296829 (+) True XLOC_010172
TCONS_00020172 mRNA downstream 96104 41826584 ~ 41838768 (+) False XLOC_010179
TCONS_00020173 mRNA downstream 143228 41873708 ~ 41897579 (+) False XLOC_010180
TCONS_00020175 mRNA downstream 143354 41873834 ~ 41897580 (+) False XLOC_010180
TCONS_00020176 mRNA downstream 143354 41873834 ~ 41897745 (+) False XLOC_010180
TCONS_00020177 mRNA downstream 143521 41874001 ~ 41889208 (+) True XLOC_010180
TCONS_00020166 other upstream 168878 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020157 other upstream 663083 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020150 other upstream 1131539 40576679 ~ 40585776 (+) False XLOC_010161
TCONS_00020144 other upstream 1368361 40346595 ~ 40348954 (+) True XLOC_010157
TCONS_00020142 other upstream 1369939 40346447 ~ 40347376 (+) False XLOC_010157
TCONS_00020194 other downstream 1042232 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020198 other downstream 1145966 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020200 other downstream 1167949 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020214 other downstream 2874846 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020216 other downstream 2952585 44683065 ~ 44687935 (+) True XLOC_010212

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_03898513_03905519.mRNA True 3533 mRNA 0.44 10 CI01000027 3897266 ~ 3906494 (-)