RNA id: TCONS_00020189


Basic Information

Item Value
RNA id TCONS_00020189
length 1949
RNA type mRNA
GC content 0.47
exon number 9
gene id XLOC_010190
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 42481447 ~ 42495383 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTTCGCTCTGTTCTGGTGTGCTGACGACACTTCCGGAGTTACGCCCGACTCCATTTTACACGAAAACAATCTTTGGAGGAAATATTTTCACTCGGGCTGGTAGAGTGCATCCACACCACATTCCTCTCACTGATAGACATGCTGTTGTACATCAAGTGTTGATTGATGAGACTGTCTGGAGTGCAACATGAAggatacttttattatttatcagccATGAATCAAGACTGAGGAAGAAAAATAACCCTTCCCTTGAACTGCGATCTCCTCCGTTTCAAAGCTCAAGAGCTGCTTTATTATGAAACATGGACCAGGGTACAGTTGACAGCCCCGTTACTCTTGTCATCAAGGCACCCAACCAGAAATATGACGACCAGACCATCAATTGTTTTTTGAACTGGACAGTAGAGAAATTGAAAAAACACATCTCCAATGTGTATCCTAGCAAACCGTTATCCAAGGACCAGAGACTTGTCTATTCTGGACGACTTCTGCAGGATCACTTGCAGTTGAGGGATGTGCTAAGAAAGCAGGATGAATACCACATGGTCCACCTGGTGTGTGCTTCACGAAGCCCTCCATCATCCCCAACTACAGACAGCCACTTTAGCACCACTGATTCCAGTTCTTCAaCGTCAGACAGTGCTGGTCCATCCTTGTCATCTACCCCCAGTCAGGAAGCCCAGGCCAATTCTGATGGTCTACGGCACAGAGGGAATCCAGCAGCAACTCACGGCCTCAATCCTGCCCCTACTGGTGTGATGCAGAGACCTGAAGGAATGCCTCTTCCCATGCAAGGTGGTCCTGCTGCTGGCTTCCCTACCCACCCTATGTACATGCCGATGCAAATGTTTTGGTGGCAGCAGATGTATGCTCGCCATTATTATGTCCAATATCAAGCTGCAATTGCAGCGTCCCGGGCCTCCAGCGTGGCCCCGTCTCCCTCACTTAGTGCTGGCCCTGCCACACAGCCAGTTCAACCCAATGAACCTGCAGCCCCTATGGGGCCCAATCCCGCCCCTGAGGACCGACCTGCCAACCCCAACATCCAGATGAACGCTCAGGGTGGAGCCATGCTAAATGACGATGAGCTCAACCGAGACTGGCTGGACTGGATGTACACCGTGTCACGTGCCGCCATCTTGCTCAGCATTGTCTATTTCTATTCCTCCTTTGGCCGCTTCGTCATGGTCATCGGTGCCATGCTGCTAGTTTATCTGCATCAGGCTGGCTGGTTTCCCTTTAGAGCCGAATTGCAAAATCCAAGGGCTGAAGAAGGTGCACAAGACGAGGCTGATCAGAATCAGGATATGCAAGAGATGGAGCGTATGATGGATGAGGGGATTGAGGATGATGAGGGCGATAGCGGAGAGGAAGGTCCCGATGATCCCATGAACGCAGGCCCGCACCAGCCAGGCTTCCTATCGGCCACCTGGTCCTTCATCAGCACTTTCTTCACCTCCCTCATTCCAGAGGGACCTCCACAGGCTGCCAACTGAACACTACCATGTCTGTGCACAGTGGAGAGGAAAAAATTGACGATAGActgaataatcataataataataataataataaaaacacaaacaaatacaacaTGGATCTGCCATGTTCTGGCAAGTCTGTAATGCTGCTTCAGTGGTGTTCAATTTTTCCTCATGCCATTGCCTAATGCATTTTTTCCCGCCTTTGTCAACAAGACGGGTGAGGTTTCATGGATGTCCTGTCCATGTTGTTACGaaagaccttttttttcttctcaagaCTGGTTGATAAACATAAGACCATAAGACTCATAAGTGCATCATGCAGTTACTTTAGTGCATAACtatttttctctttctttgtgtgtaaataaatagtaaatatttacaGATATGAATATATGCATCTCATTGAAATAAGGTGTGTTTTTGAATAAAATCAGGTTTTGGTTTCTTGTCGTAA

Function

GO:

id name namespace
GO:0030968 endoplasmic reticulum unfolded protein response biological_process
GO:0006986 response to unfolded protein biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-868 Predicted to be involved in endoplasmic reticulum unfolded protein response. Predicted to act upstream of or within response to unfolded protein. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human HERPUD2 (HERPUD family member 2).

Ensembl:

ensembl_id ENSDART00000037401

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020184 lncRNA upstream 11301 42464009 ~ 42470146 (+) False XLOC_010187
TCONS_00022013 lncRNA upstream 11301 42464222 ~ 42470146 (+) False XLOC_010187
TCONS_00021748 lncRNA upstream 143898 42337245 ~ 42337549 (+) True XLOC_010186
TCONS_00022012 lncRNA upstream 385187 42090306 ~ 42096260 (+) True XLOC_010184
TCONS_00020182 lncRNA upstream 407742 42066582 ~ 42073705 (+) True XLOC_010183
TCONS_00022014 lncRNA downstream 26361 42520706 ~ 42521936 (+) True XLOC_010191
TCONS_00022015 lncRNA downstream 196714 42691059 ~ 42693663 (+) True XLOC_010193
TCONS_00020192 lncRNA downstream 278323 42772668 ~ 42781775 (+) False XLOC_010194
TCONS_00020193 lncRNA downstream 278336 42772681 ~ 42774583 (+) False XLOC_010194
TCONS_00020195 lncRNA downstream 282048 42776393 ~ 42781447 (+) True XLOC_010194
TCONS_00020188 mRNA upstream 3495 42477155 ~ 42477952 (+) True XLOC_010189
TCONS_00020187 mRNA upstream 8460 42471455 ~ 42472987 (+) True XLOC_010188
TCONS_00020186 mRNA upstream 11291 42465518 ~ 42470156 (+) True XLOC_010187
TCONS_00020185 mRNA upstream 11301 42464613 ~ 42470146 (+) False XLOC_010187
TCONS_00020183 mRNA upstream 172767 42270499 ~ 42308680 (+) True XLOC_010185
TCONS_00020191 mRNA downstream 173215 42667560 ~ 42683501 (+) True XLOC_010192
TCONS_00020196 mRNA downstream 335390 42829735 ~ 42843397 (+) False XLOC_010196
TCONS_00020197 mRNA downstream 335807 42830152 ~ 42842970 (+) True XLOC_010196
TCONS_00020202 mRNA downstream 583564 43077909 ~ 43118095 (+) True XLOC_010200
TCONS_00020203 mRNA downstream 645159 43139504 ~ 43150489 (+) True XLOC_010202
TCONS_00020166 other upstream 933010 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020157 other upstream 1427215 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020150 other upstream 1895671 40576679 ~ 40585776 (+) False XLOC_010161
TCONS_00020144 other upstream 2132493 40346595 ~ 40348954 (+) True XLOC_010157
TCONS_00020142 other upstream 2134071 40346447 ~ 40347376 (+) False XLOC_010157
TCONS_00020194 other downstream 278367 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020198 other downstream 382101 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020200 other downstream 404084 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020214 other downstream 2110981 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020216 other downstream 2188720 44683065 ~ 44687935 (+) True XLOC_010212

Expression Profile

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