RNA id: TCONS_00020190


Basic Information

Item Value
RNA id TCONS_00020190
length 2890
RNA type mRNA
GC content 0.41
exon number 8
gene id XLOC_010190
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 42481447 ~ 42495383 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGGTAGAGTGCATCCACACCACATTCCTCTCACTGATAGACATGCTGTTGTACATCAAGTGTTGATTGATGAGACTGTCTGGAGTGCAACATGAAggatacttttattatttatcagccATGAATCAAGACTGAGGAAGAAAAATAACCCTTCCCTTGAACTGCGATCTCCTCCGTTTCAAAGCTCAAGAGCTGCTTTATTATGAAACATGGACCAGGGTACAGTTGACAGCCCCGTTACTCTTGTCATCAAGGCACCCAACCAGAAATATGACGACCAGACCATCAATTGTTTTTTGAACTGGACAGTAGAGAAATTGAAAAAACACATCTCCAATGTGTATCCTAGCAAACCGTTATCCAAGGACCAGAGACTTGTCTATTCTGGACGACTTCTGCAGGATCACTTGCAGTTGAGGGATGTGCTAAGAAAGCAGGATGAATACCACATGGTCCACCTGGTGTGTGCTTCACGAAGCCCTCCATCATCCCCAACTACAGACAGCCACTTTAGCACCACTGATTCCAGTTCTTCAaCGTCAGACAGTGCTGGTCCATCCTTGTCATCTACCCCCAGTCAGGAAGCCCAGGCCAATTCTGATGGTCTACGGCACAGAGGGAATCCAGCAGCAACTCACGGCCTCAATCCTGCCCCTACTGGTGTGATGCAGAGACCTGAAGGAATGCCTCTTCCCATGCAAGGTGGTCCTGCTGCTGGCTTCCCTACCCACCCTATGTACATGCCGATGCAAATGTTTTGGTGGCAGCAGATGTATGCTCGCCATTATTATGTCCAATATCAAGCTGCAATTGCAGCGTCCCGGGCCTCCAGCGTGGCCCCGTCTCCCTCACTTAGTGCTGGCCCTGCCACACAGCCAGTTCAACCCAATGAACCTGCAGCCCCTATGGGGCCCAATCCCGCCCCTGAGGACCGACCTGCCAACCCCAACATCCAGATGAACGCTCAGGGTGGAGCCATGCTAAATGACGATGAGCTCAACCGAGACTGGCTGGACTGGATGTACACCGTGTCACGTGCCGCCATCTTGCTCAGCATTGTCTATTTCTATTCCTCCTTTGGCCGCTTCGTCATGGTCATCGGTGCCATGCTGCTAGTTTATCTGCATCAGGCTGGCTGGTTTCCCTTTAGAGCCGAATTGCAAAATCCAAGGGCTGAAGAAGGTGCACAAGACGAGGCTGATCAGAATCAGGATATGCAAGAGATGGAGCGTATGATGGATGAGGGGATTGAGGATGATGAGGGCGATAGCGGAGAGGAAGGTCCCGATGATCCCATGAACGCAGGCCCGCACCAGCCAGGCTTCCTATCGGCCACCTGGTCCTTCATCAGCACTTTCTTCACCTCCCTCATTCCAGAGGGACCTCCACAGGCTGCCAACTGAACACTACCATGTCTGTGCACAGTGGAGAGGAAAAAATTGACGATAGActgaataatcataataataataataataataaaaacacaaacaaatacaacaTGGATCTGCCATGTTCTGGCAAGTCTGTAATGCTGCTTCAGTGGTGTTCAATTTTTCCTCATGCCATTGCCTAATGCATTTTTTCCCGCCTTTGTCAACAAGACGGGTGAGGTTTCATGGATGTCCTGTCCATGTTGTTACGaaagaccttttttttcttctcaagaCTGGTTGATAAACATAAGACCATAAGACTCATAAGTGCATCATGCAGTTACTTTAGTGCATAACtatttttctctttctttgtgtgtaaataaatagtaaatatttacaGATATGAATATATGCATCTCATTGAAATAAGGTGTGTTTTTGAATAAAATCAGGTTTTGGTTTCTTGTCGTAATGACGTGGTTTTAATTGAACTGATACACCACTAGTGGGCGCCACTTAAATACAAACCAGCACATTTACAATCATGATCAATGCATTTTGTAATAAGAAATGTTCAGTCTAACAGTGGTTTATATGGTAACATCTTTGTCAAGCGTTTTTGGAACAGCAATCGTTTAATGATGCAAATGTAAGGTTAACAGTGTAGATCTAAAATAAACCTACAGCCTATTTTTCCTGAGAGCAATACGttttattaacataataaaaacaccCTTTATATCTATCTTATTAAATACAGGTCAGAAAAAGTAGACACTTTAAACGTTCATCCATATAATctcttttgtaatttattttaatgcacaggTGTTAAGGTCAcatcctggagggctgcagctctgcacagttcagttccaaccTTATTTAAACATATCTGATCCAACTAATTGAGTACTTTAGGCTTTTGGTTTTTAAACCATTTATACATCCAAACCTTGCATAATTCTGTTATTAACACCTTTCAacgttttttattgtttttacattttacatttacattgagcATTCAAAAGTGGTGAAAAaagctctaaaatattttttgctaatatcttcagtaaactatgcatttaaaaaaaatgacaataattgaacagaaataaaaaaaattggctATAGTTTAGCCACTAGTAAACGAAATTAAGCCATTTGTTTTACAGACGAAatatttgaaactattttataatCGAAGCTGCAGCATGTTTGTGCTCTATATCAATTAATtgctgtaaaaacaaacaaatattgttgctatttttctttattgatatGACGAATCACACATGGTGAGCTTTACTGCAgaatgtttttaaagatattttaaaaacattcttgTCAATGCCAGAGTGcaacatttataaaaattatcTTTCTTCATGTTCATCATGGAAAAAGAAACGCATTAAAGATGAAGAGTtggtaaacagtgagtaaatgtaaAAGAAATTGGAGGTGAATGTCTATTTAATTTAGATGTACTGCATGATTGAGA

Function

GO:

id name namespace
GO:0030968 endoplasmic reticulum unfolded protein response biological_process
GO:0006986 response to unfolded protein biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-868 Predicted to be involved in endoplasmic reticulum unfolded protein response. Predicted to act upstream of or within response to unfolded protein. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human HERPUD2 (HERPUD family member 2).

Ensembl:

ensembl_id ENSDART00000184225

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020184 lncRNA upstream 12124 42464009 ~ 42470146 (+) False XLOC_010187
TCONS_00022013 lncRNA upstream 12124 42464222 ~ 42470146 (+) False XLOC_010187
TCONS_00021748 lncRNA upstream 144721 42337245 ~ 42337549 (+) True XLOC_010186
TCONS_00022012 lncRNA upstream 386010 42090306 ~ 42096260 (+) True XLOC_010184
TCONS_00020182 lncRNA upstream 408565 42066582 ~ 42073705 (+) True XLOC_010183
TCONS_00022014 lncRNA downstream 25323 42520706 ~ 42521936 (+) True XLOC_010191
TCONS_00022015 lncRNA downstream 195676 42691059 ~ 42693663 (+) True XLOC_010193
TCONS_00020192 lncRNA downstream 277285 42772668 ~ 42781775 (+) False XLOC_010194
TCONS_00020193 lncRNA downstream 277298 42772681 ~ 42774583 (+) False XLOC_010194
TCONS_00020195 lncRNA downstream 281010 42776393 ~ 42781447 (+) True XLOC_010194
TCONS_00020188 mRNA upstream 4318 42477155 ~ 42477952 (+) True XLOC_010189
TCONS_00020187 mRNA upstream 9283 42471455 ~ 42472987 (+) True XLOC_010188
TCONS_00020186 mRNA upstream 12114 42465518 ~ 42470156 (+) True XLOC_010187
TCONS_00020185 mRNA upstream 12124 42464613 ~ 42470146 (+) False XLOC_010187
TCONS_00020183 mRNA upstream 173590 42270499 ~ 42308680 (+) True XLOC_010185
TCONS_00020191 mRNA downstream 172177 42667560 ~ 42683501 (+) True XLOC_010192
TCONS_00020196 mRNA downstream 334352 42829735 ~ 42843397 (+) False XLOC_010196
TCONS_00020197 mRNA downstream 334769 42830152 ~ 42842970 (+) True XLOC_010196
TCONS_00020202 mRNA downstream 582526 43077909 ~ 43118095 (+) True XLOC_010200
TCONS_00020203 mRNA downstream 644121 43139504 ~ 43150489 (+) True XLOC_010202
TCONS_00020166 other upstream 933833 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020157 other upstream 1428038 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020150 other upstream 1896494 40576679 ~ 40585776 (+) False XLOC_010161
TCONS_00020144 other upstream 2133316 40346595 ~ 40348954 (+) True XLOC_010157
TCONS_00020142 other upstream 2134894 40346447 ~ 40347376 (+) False XLOC_010157
TCONS_00020194 other downstream 277329 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020198 other downstream 381063 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020200 other downstream 403046 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020214 other downstream 2109943 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020216 other downstream 2187682 44683065 ~ 44687935 (+) True XLOC_010212

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_03484797_03490716.mRNA True 1489 mRNA 0.53 8 CI01000027 3484742 ~ 3490953 (-)