RNA id: TCONS_00022014


Basic Information

Item Value
RNA id TCONS_00022014
length 375
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_010191
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 42520706 ~ 42521936 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGAAAGACAGCATCAGTTGTTTCAAAATAGGCTAATTAATTTCGTTTTTAGTTTTAGCACTATTCTTTAACAAAGATGTAGcaattattaacattataaaagaaacaaattccTACCTAGCAGGTAAAGGTGGATCTGCCTTTCCCGCCACCAGCCATGAAGATCTATGGTAGGCGTATCGATATCTCTTATTGTCCACCGGAACTATGTCCATTAGCACAATGTATTTGGCGTCTGGGTCCACTCCGGAAAATGACACACGAATTGTCGGAAACATTCGTCTGTTGAAACAAAATAATACGCATTAAAAGACTTTGTAATAATCATTTCAGTGCCGAGTTCGTGAAACTTGTCCCACAGCTCTTTGGTCTCGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020184 lncRNA upstream 50560 42464009 ~ 42470146 (+) False XLOC_010187
TCONS_00022013 lncRNA upstream 50560 42464222 ~ 42470146 (+) False XLOC_010187
TCONS_00021748 lncRNA upstream 183157 42337245 ~ 42337549 (+) True XLOC_010186
TCONS_00022012 lncRNA upstream 424446 42090306 ~ 42096260 (+) True XLOC_010184
TCONS_00020182 lncRNA upstream 447001 42066582 ~ 42073705 (+) True XLOC_010183
TCONS_00022015 lncRNA downstream 169123 42691059 ~ 42693663 (+) True XLOC_010193
TCONS_00020192 lncRNA downstream 250732 42772668 ~ 42781775 (+) False XLOC_010194
TCONS_00020193 lncRNA downstream 250745 42772681 ~ 42774583 (+) False XLOC_010194
TCONS_00020195 lncRNA downstream 254457 42776393 ~ 42781447 (+) True XLOC_010194
TCONS_00022016 lncRNA downstream 273668 42795604 ~ 42800731 (+) True XLOC_010195
TCONS_00020190 mRNA upstream 25323 42482270 ~ 42495383 (+) True XLOC_010190
TCONS_00020189 mRNA upstream 26361 42481447 ~ 42494345 (+) False XLOC_010190
TCONS_00020188 mRNA upstream 42754 42477155 ~ 42477952 (+) True XLOC_010189
TCONS_00020187 mRNA upstream 47719 42471455 ~ 42472987 (+) True XLOC_010188
TCONS_00020186 mRNA upstream 50550 42465518 ~ 42470156 (+) True XLOC_010187
TCONS_00020191 mRNA downstream 145624 42667560 ~ 42683501 (+) True XLOC_010192
TCONS_00020196 mRNA downstream 307799 42829735 ~ 42843397 (+) False XLOC_010196
TCONS_00020197 mRNA downstream 308216 42830152 ~ 42842970 (+) True XLOC_010196
TCONS_00020202 mRNA downstream 555973 43077909 ~ 43118095 (+) True XLOC_010200
TCONS_00020203 mRNA downstream 617568 43139504 ~ 43150489 (+) True XLOC_010202
TCONS_00020166 other upstream 972269 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020157 other upstream 1466474 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020150 other upstream 1934930 40576679 ~ 40585776 (+) False XLOC_010161
TCONS_00020144 other upstream 2171752 40346595 ~ 40348954 (+) True XLOC_010157
TCONS_00020142 other upstream 2173330 40346447 ~ 40347376 (+) False XLOC_010157
TCONS_00020194 other downstream 250776 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020198 other downstream 354510 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020200 other downstream 376493 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020214 other downstream 2083390 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020216 other downstream 2161129 44683065 ~ 44687935 (+) True XLOC_010212