RNA id: TCONS_00022016


Basic Information

Item Value
RNA id TCONS_00022016
length 4927
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_010195
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 42795604 ~ 42800731 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCACGAGTTAAGATGAACAGTCGATTGAGACATTTGACCAAAGCAGACCAACACTCATTAAAATGCAATCACATGCTAATAGTCAAAGAAGTTGCACAACAAAGtgttttttatacttttaaataatttaatacttGTTAAAATTATTTGGTTTACTACATTTGACCTGTGTATCACACTAAACATACAAAATAACAAGAAATAGTTAATCCATAATCcaataaatcaggggtcaccaatctcggtcctggagggccggtgtccctgcagggtttagctccatcttgcctcaacacacctacctgggtgtttcaagtatacctagtaacaccctgattagcttgttcaggtgagtttgattagggttggagctaaaatctgcaggacaccggccctgcagaaacaagtttggtgaccactgcaataaatgatgcattgttgGTGTAACTGTAACCCTTCTATGTGAAATGAGAGCAGAACACTGGGCTACGGCTCAAACTACCCGACGACAGTGTAGCACAGACAGAGGTCATTGTGTACAGCACCTAAAACACCCTTTACACTATTAACACCTTTTCAAGTACACTTGAATACAATTTCAACTCATTTAAACTGATGTTTTTGTACAGCAggtcagaaatatatatttagatacaAACAAATCAAACTCTGTTATCTGACTGGCGTGTGTGAAATGAAAAGAGGAGAATCGCTTAAATCAATGAACACACAGCAAAGTGCCAAGATTCTCCTAATCACATCAGGATAACAAAGAGCCAGGTTGTCAGAGATCTGAGATTTCAGTCCGTCGATTGGGCTTTATCGCATTTTCTGGAAGATTTGCTGTAGCCGTTGAGCTCCGGATGTTCATTATTTCCTACAAACACCCTGTGACACAGAAGCTACCGTCAAAGTGAAACTGCACCAACGCTTCGGTATTAAACGTTAAAATTCATTtcgataaaaataaaaaacgacAAGAATAGAACCCTACAGGCATAAAAAAATATTCCTCTTTTAGTTTTCATGATACATTTCAAGTACACTAAGTTGAATTCACATCAAGTTTAGAACATCTCAAAGCAGAAGCACTAAATTCACTCACATCATCATAAGCTTGAGTTGAACTATGTGTTTGACACGGACAGCTCTTTAGGGAAATTCATTCTCATGTATTTTGTGCAGAGATTCCTCTTCTGTATGTAAACTGAGCTCCCAGCTCGTCTTGAACTATTTAGCGCAGCATGTTAGCACAGACGCATGTCCGAGTGATTGTTCacattcacaataataatatgaaatcaGTGCTGAGGCAGCACAGAATATTGCACGTTCAAACGTCTGAGACACAATAGTACTCTGTACAGTATGTACACAATATCTGTGCTCTGTGTCTCCAGAGTGTGCGTTAGGCGAGGGGTTTCTCCCGCTGAGTCGGGTCAGGGTGTGTTGATATGTGTGGTTTTGGATGGGGGTTTGTAGAGTTTCTTTGGGATTTTGAGTTTCAAGAATTGCACTTGACTTATTTTGTATCACTTACAAGAGGTTAAGAAAGATATGCAACCCATCCAAAAGCCCTGAACATGCATTATGCTTAACTGGTACAGTTGGGTTttgttattaaatagtttttattatagttttatgttAATCAATTGTTGTAAaaaatactttctttttttttttagtttaaatatttgtatgcACTTCCGGTATGCAAACAAATTTTCTTTATCtaacaccgtttacagtaatattcAGCAGTCGGCAAACTTTAATGCTCTCTAAGGCAGTGGTCCCCTACCCCCAGGTCGCGGACTGGTACTGGTTCGTGGATCAATTGGGCCGCacaataaatcaaatattatttccattttattgaaatatttttccatcttttattctaaaaatcttttcattttgaaaaatggCCGTATTCTCTCAGTTACATCTCGTTTACTTATGTGCCAACATTTAatccacaagcagcaaaatgagtgaGGAAAATTTCTTTGTGAAAGGGAAAAGGCTCAGTGAAGGACCCGCAAACTGCtgaggaatggatccgcaacctatttgtcaacaaatcaggtgaatccagcatgtctgtgcaagaaaatcaactactggagattgcaaatgacggcGGCCGTTCACATATTGAGTCTTTTCCGCATGCAAACTTGTTATTTCTAATGGAGGAGTGACGCGCAGGAGCAATGCACCCAGTTGCTGCGAATAAATTCTGTATGGAATATACAaattttggtagactaattagctcagccaaacactgcagtgctttttaattctctacataaataaaacttgtatcagagttgcagcattGTTTTGTcggcttgtcatcctctgagaaaatgacTGTTGGTCATCTAGCACCTCCCGGGCcacggtaaaattgtcaagcattgACCGGATCGTGGTGATAAAAACATTGGGGACCACCGCTCTAGGGTACATCCTATGGAAAAATCAGAAAGCTTGCCAATTAAAAGTCCTTAAAAGGACAAACTAACAAAACTAAATATCACATTATAAAGTATTGAGTTATTTAAAAGCGAACAATCTACTTCAATTACCTTACCTTTAGATTGAAATTCAAATGTTTTGTAAAGGCTGAATAATTTAGTGATTGCGTTTTAAACTACACCTCTCAATGGAAAATGGACATTTTATAAggaacattaaaattaattaagaatTATTCCACAGGATCACCACAGAGCCACCACACTCGATTATAACAATTTCCAAAATTAAGGGTACACACTCACTAGGGCAGTACCATCTTTACTTtccccttaaaaaaaaatctcattacaGAGTAGATAAGGCCTTGAGGCTTGGAGGGGCCCACAGTGTCTGGGGTAAGGGGTGGAGGGGGGTGCAAATTTTACAGAGGGAAGACCCCCTCCCAAATGCCCAGAGCAGAATCCTGTGCAGCATAGGACCCAGAACACCAAGCCATTGCTTAAGGGTACACTAATGTGCTAATATGCACATTTTAAGGGGTATACAGTTCAAAATTGGCCCAATTCAggatactgccccagtgacaagctGTTGCATCCCTAAAGGTCAAATTTCTGCACTTTCTTATCTGACAGTGCACAACAGCAAGGAAGCTGAAAGCCATAACAGCGCTAATATATAGAGAAACCCACAGAACACAAAATCTGTGAGGTCTCATCTAAGATTTGCAGCAAATTCAAACACCAACAGCACTTCCACTGACACAAATTCTTCACGCATTCTCAATCTTTCATGATCAAGGAATAATCCCAAATAAGAATGGTCTCCATTGAAAACATGGAACAATTGGAAGTGATCCTTTATATGATATTTGATGATGTGAcaagttttctttttaattttctgaTTTTGAAGAAGTTTTATTTCCGCAATGCTGATGTATGTATTATGTTCTTTTGGAGCTGAACTGGACAGGAGCAGTTGTGCCTCAAAAAAAGATGTAGATGATCCTAGACGAtcactgactctctctctctctctccatcttttTCTCTTCTGCTCTCAATCTCCATTCATCTCCATCACCTTTTCTGTAAGTATTTCCCGGAAGGTCGATAGCTGTTTCATCTGCTCCGTCTGCATTGAGTGTCTCCTCATGAGTTTTTTCTTCATCTTGAAGTCTGGCCCACGTTTTGGGGATGAAGGTGCGACCGGCAGCAGGATCTTGCTCCCTGAGTGAACGGGAGAAGTGGGCTTTCCGTTGGCACGGATATCAGGAATGGGTCGCTGGGGATTGACGTTGAGGGGTGGAAGGAACCCTGGTCGAGTGTGGGAGATGTGGTCCAAGAGGAGAGTCCCTGATCCCCGCCTTTCCAGCAGTCCTGTGGGACGCCGCCTCATTGTGATAGGAGATACTGAGTTGGGAATGCTCTCCAGGGACTCTCGAGAAGAGCTGGTGAGCAATGACAATGGAGAGGCATTGTATTTGCGGCGTTCAACCGAGACACGTCCAGAATCTGGAGATCCAGGGATGGAGGTAGGACACAGGTGAGTGTCCGACTCATAGTGCTCCATGCGGGTGAGTTTAGGGTGTGGTAAGCCACGGATGCCCGCTGATGCCTGAGCCACATTGTCTTGAGTCTCAGGAGCCGTGTTTCTACGATACAGTGATTGGTGCTGATTAACTTTATCTGCCCAGGAAGAACCACAAAGTGCGGCACAGTCTTCTGAACAGGACCGGTCCATCAGCTTCGGAGAAGATGGGTCATGGGTCTCTATACTGTGCCTACGTGACAGGAGAGGTCTGCCTGGACCAGAAACTGTCATCCCATTCATCTCCGAGACCAGTTTGTCCTCCTCTGCTAAATCACCCTCTATCCTCTCAGCTCGCTCAGCAAGTACGGAAGGAGCAACCAGACCCCAAGGCTCAGAGTTCAGTCTTTTCAGAAGCTTGCGGGGTGGTGGTCTCCGCTCCCCTGGTGGTCTGCTGGATGGTAGCGGAAGTGCTGAAGTCATGGCAAAGCTGAAGATACCTTCCTCTTCCTCACCAGGGCCAGATCCAGTGGTATGGATCTCCACTTCTGATGGAGACATGCAAGCAGGGGAGAGCTTGTCCACTATACCAGGAGATGGTGGGGAGTTCAGGTATTGTTTGGTCTTTTTAGTGCCAGAGGGAGATGTATCGGTGGTAATGATGATTACCTCTTTGCCTTTGGCTTTGCAGGCATCCAGTAGGACCTGGAGAGTGTCTCGATCACCCTTATTGATGGCATGTACGAGTGCCGAAGCCCCAGAGTAGTCTTTCAAACTGGGATCAGCACCGTTTTCCAGCAGCAGCGACACCACCTCTTTGCCTGCCAGTTCTGCACATGCATGCATTAAAGCAGTCCGGCCCGTTTTATCGGGAATATTTGGGTCTGCCCCTCCATCACCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020192 lncRNA upstream 13829 42772668 ~ 42781775 (+) False XLOC_010194
TCONS_00020195 lncRNA upstream 14157 42776393 ~ 42781447 (+) True XLOC_010194
TCONS_00020193 lncRNA upstream 21021 42772681 ~ 42774583 (+) False XLOC_010194
TCONS_00022015 lncRNA upstream 101941 42691059 ~ 42693663 (+) True XLOC_010193
TCONS_00022014 lncRNA upstream 273668 42520706 ~ 42521936 (+) True XLOC_010191
TCONS_00020199 lncRNA downstream 96851 42897582 ~ 42901740 (+) False XLOC_010198
TCONS_00022017 lncRNA downstream 96899 42897630 ~ 42901740 (+) False XLOC_010198
TCONS_00020201 lncRNA downstream 97744 42898475 ~ 42900680 (+) True XLOC_010198
TCONS_00022019 lncRNA downstream 240774 43041505 ~ 43048279 (+) False XLOC_010199
TCONS_00022018 lncRNA downstream 240774 43041505 ~ 43048279 (+) False XLOC_010199
TCONS_00020191 mRNA upstream 112103 42667560 ~ 42683501 (+) True XLOC_010192
TCONS_00020190 mRNA upstream 300221 42482270 ~ 42495383 (+) True XLOC_010190
TCONS_00020189 mRNA upstream 301259 42481447 ~ 42494345 (+) False XLOC_010190
TCONS_00020188 mRNA upstream 317652 42477155 ~ 42477952 (+) True XLOC_010189
TCONS_00020187 mRNA upstream 322617 42471455 ~ 42472987 (+) True XLOC_010188
TCONS_00020196 mRNA downstream 29004 42829735 ~ 42843397 (+) False XLOC_010196
TCONS_00020197 mRNA downstream 29421 42830152 ~ 42842970 (+) True XLOC_010196
TCONS_00020202 mRNA downstream 277178 43077909 ~ 43118095 (+) True XLOC_010200
TCONS_00020203 mRNA downstream 338773 43139504 ~ 43150489 (+) True XLOC_010202
TCONS_00020204 mRNA downstream 351996 43152727 ~ 43284939 (+) False XLOC_010203
TCONS_00020194 other upstream 14210 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020166 other upstream 1247167 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020157 other upstream 1741372 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020150 other upstream 2209828 40576679 ~ 40585776 (+) False XLOC_010161
TCONS_00020144 other upstream 2446650 40346595 ~ 40348954 (+) True XLOC_010157
TCONS_00020198 other downstream 75715 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020200 other downstream 97698 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020214 other downstream 1804595 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020216 other downstream 1882334 44683065 ~ 44687935 (+) True XLOC_010212
TCONS_00020217 other downstream 1903641 44704372 ~ 44705154 (+) True XLOC_010213

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_03278134_03279807.mRNA True 2889 mRNA 0.50 1 CI01000027 3278134 ~ 3281022 (+)
bowfin (Amia calva) AMCG00012498 True 1656 mRNA 0.63 1 CM030138.1 19828500 ~ 19830155 (-)