RNA id: TCONS_00001591


Basic Information

Item Value
RNA id TCONS_00001591
length 2626
RNA type mRNA
GC content 0.50
exon number 5
gene id XLOC_001003
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8638162 ~ 8646941 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCTACACTATATACTGAACATACACCATTGATATACACATATTACCGCTATGCGTGTGCCAGATTTTACAGTATCAACAACTGTTATACGTTTATTGAGATGGCAAGAATTAGTTTTTCTATATTACTGAAGTACACATCCCAACACCTTTCCCAAAAGCGCCATGAATAATCAAATTGAAACGGCTCAGTGCTTCTCAGACAACATTTCTcaggtctctgtcaccatctctGACTTCTCAGATGAGATTTTACTGAATATCCTGCGATTCATTCCCAGCCATGACCTGATACTCAACGTAAGTCGAGTGTGCAGAAAACTCCGAACTCTCTGTCTGGACAAGAGCTTGAGAGTCCATGTACACCTGCATAAAGAATACACGGCAAACGACGATGCTGTGAAGCAGCTCTTAAAAGTAATTTCAGCTGACATCCAGACGTTAAACCTCAATGGCTGCTACTGGCTGGCCGGCTCTACAGTGGATCAGGTCACCCGCTGTAAGTCTTTGGTCAGTTTGGACCTTTCCGGCTGCAGATTGACATCAGTTCGCCTCTCGCATCTGCTGAGCTCTCTTAGCTCTCTGAAGTCTCTGGCACTGGATGTGGGGCCGGGGTTTGATCTCCACCAGCTGAGCGCAGAGGGTAAGTCTGCTCTGGCTCGTCTGCAGGAGCTCAAGCAGACGCTGTTGACTCCTTCCTATGGCGTGGTTCCCTGCTGCAGTGCCCTGCGGCGCCTTCACCTCTATCTAGAGGCCAGCGAGGTCTGGAGGGAGGCCGGCGGCTGTGCGCAGCTGATGGTGGGCCAGAGCAGCGTGCCGCACTATCAGAATCTGCGCTGGTTCTCCGCTCGCCTCGCACCCGGTGAAGTCAACCGTACTCTGTTGGCGCTTTACTTAGCTGTTTTCAGTATGAGAGTTCCTGAAGGCCTTGCAGGATTGGTACTCTCTGTGCCAGGCCCTGCACCGCCACGACCAGTCGCAATGACGGCGCTAATGGAAAGCATGGCGTCAACTGTGGGAAATACTGTTAGTGCTTTGCAGCTTCCACGTACATGGTTGGACGGTGCTATACTTGGGCGGGTGTTAGCGCATGGATGTCCTGCATACCTGAATGTCTCCCGGTGTTCATCTCCAGGGTTCAACCCTTTACATGTGCTACTCAGTGCGGGACGTGACCTCACACCCCTGCGGAGCCTCAACCTGCGGGGATGCGGTCGAGGCCCGCTCTCTGAGAGCTGTGGGAAGGGCGATGAGGAGATGGACACGGACAGCGTCAAAGCACTTGCTGAATGTTGCCCACATCTTAATCACCTTAATTTATCTGCAACGCACTACCATCATAATCTCTCCACGGGGCAGGATGGACACTTGTGTGGTACTTTGGGACGCCTCACTGGCTTGTGCTCGCTTGCACTTCCGGTGTGTGCATTAGCACAATCTCCTCCAACTCAAATAAACAATCAAGACTCCAACACAGACCTCGCCTCAAGATCACTGCTGCTCGGGCTTAAAAAGACCACCCGCATTGGTGTGCCCACATATCGACCCACATCTGAAATCGCAGTGGGTCAGGGGGAAGAGCGGACAGACCGGGGCTTGTGCATTCAACCACTGCTTCAAGGTTGCCCGTATCTAGTAGAGCTGGAGCTGATTGGTGCAGGCTTTTCCTCAGCCATGCCCCGGAACGAGCCGGCCATTCGCAAGGACCCCGCTGCATGTTCCTGGTCCTACAGCGTTGGAGATGGGGAGTTAGCTGCTTTAGGTGGGATGAAATTTTTGCGCAAGCTCACCCTCGCGCATTTACCAGGAGTTCTGAAGGGGACGGGACTCATCGAGCTGCTTCAGGGGTGCAAGGACCTGCATTCCTTATCGCTGGCAAATCTAGGATCTTTAAAGACCATGAACTACACGCAGGCCCTGCTGGAGGCTCTTTCCTACTGCACACAAGTCAGGGACTTAAGGCTGGAGCAGCCCTACTTTAATGCAAACGCAGCGTTTTTCGAAGCGCTCAGTCAGTGTGGTCAGCTGCGGCGTCTGTGTTTAGTTTCTCGACACGGCACTTTCCAACCCGCCGCTGTGACGGCCTTCATGCAGAGCTGCTCTGTCATCATGTGCCACATGTTCATGGGAGGAACGCTGGTGGCCTGTAAAACGCTGCAGAAAACCCTTCTGGACAGTTTTTCAGTGTCTCGTCCAGCTCTTAGTGTGGTGATTTACCCTTTACTGCATGAAGACCTGGCCCATGTGATCAGAGGTATGCCACTGTGCCACCTGGAcgaaatgacactttttaaaagtCGTGTTGCTGAAGAGCCCATGAGTCGGTGACTGTGGAAATATTGACGAAAAAAGAGAATCATTCTTTGGTGGATTAACCTGGGTCATACATCTGTGCTGTTTTTGAGAGTGTATTCATAATTGTGCATTATGGAAAGTCTGCTTTCTGATAATGAAATATTAGCAAACCGGTTGAAGGATAattggaaaacttttttttttttacttgagagATCATATGGACTATCATAGCTTTCCTAATAAGCTCATTGTTTACCAGTAAAGAGGCAGTATGAACAAGCTCTATGTCAGGTTATAATGTCATCTTTGGATATGTGCCAAAATAAAA

Function

GO:

id name namespace
GO:0061056 sclerotome development biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-050913-65 Acts upstream of or within sclerotome development. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL18 (F-box and leucine rich repeat protein 18).

Ensembl:

ensembl_id ENSDART00000103644

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001590 lncRNA downstream 12896 8615853 ~ 8625266 (-) False XLOC_001002
TCONS_00002917 lncRNA downstream 13220 8612575 ~ 8624942 (-) False XLOC_001002
TCONS_00003335 lncRNA downstream 13280 8622702 ~ 8624882 (-) True XLOC_001002
TCONS_00001589 lncRNA downstream 19518 8615535 ~ 8618644 (-) False XLOC_001002
TCONS_00003334 lncRNA downstream 50803 8579155 ~ 8587359 (-) True XLOC_001001
TCONS_00001597 lncRNA upstream 3168 8650109 ~ 8652648 (-) False XLOC_001004
TCONS_00003336 lncRNA upstream 327559 8974500 ~ 8977960 (-) False XLOC_001008
TCONS_00001604 lncRNA upstream 327559 8974500 ~ 8977963 (-) True XLOC_001008
TCONS_00003337 lncRNA upstream 331964 8978905 ~ 8980671 (-) False XLOC_001009
TCONS_00003338 lncRNA upstream 434901 9081842 ~ 9082772 (-) True XLOC_001010
TCONS_00001588 mRNA downstream 71595 8555323 ~ 8566567 (-) True XLOC_001000
TCONS_00001582 mRNA downstream 84867 8539671 ~ 8553295 (-) False XLOC_000999
TCONS_00001585 mRNA downstream 84997 8549849 ~ 8553165 (-) False XLOC_000999
TCONS_00001579 mRNA downstream 209401 8415983 ~ 8428761 (-) False XLOC_000997
TCONS_00001580 mRNA downstream 209426 8422092 ~ 8428736 (-) True XLOC_000997
TCONS_00001592 mRNA upstream 2158 8649099 ~ 8652732 (-) False XLOC_001004
TCONS_00001593 mRNA upstream 2963 8649904 ~ 8651718 (-) False XLOC_001004
TCONS_00001594 mRNA upstream 3155 8650096 ~ 8652655 (-) False XLOC_001004
TCONS_00001596 mRNA upstream 3255 8650196 ~ 8652648 (-) False XLOC_001004
TCONS_00001598 mRNA upstream 3772 8650713 ~ 8653385 (-) True XLOC_001004
TCONS_00001587 other downstream 84864 8552750 ~ 8553298 (-) True XLOC_000999
TCONS_00001570 other downstream 662393 7970406 ~ 7975769 (-) True XLOC_000989
TCONS_00001564 other downstream 717956 7920119 ~ 7920206 (-) True XLOC_000985
TCONS_00001563 other downstream 718595 7919480 ~ 7919567 (-) True XLOC_000984
TCONS_00001562 other downstream 719280 7918795 ~ 7918882 (-) False XLOC_000984
TCONS_00001595 other upstream 3168 8650109 ~ 8652655 (-) False XLOC_001004
TCONS_00001610 other upstream 471159 9118100 ~ 9118671 (-) False XLOC_001012
TCONS_00001617 other upstream 550918 9197859 ~ 9197966 (-) True XLOC_001018
TCONS_00001629 other upstream 813069 9460010 ~ 9486080 (-) False XLOC_001025
TCONS_00001646 other upstream 1093861 9740802 ~ 9816875 (-) True XLOC_001029

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_00466979_00471945.mRNA True 2154 mRNA 0.54 4 CI01000300 466979 ~ 471945 (-)