RNA id: TCONS_00020202


Basic Information

Item Value
RNA id TCONS_00020202
length 1819
RNA type mRNA
GC content 0.50
exon number 11
gene id XLOC_010200
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 43077909 ~ 43118095 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCTATGGCCCCGGTGAGAGTCAGCGAGAGTCCGCGAGCTGGAGACTGATCCACAGCAGCATCAGAAGAGAAAAGGACGTAAAGAAATAAACAGCCGTGCATCGGACAGACACGACCATGGCATCGTTAAATCTCGGGTTCAGCGGGGCTCGTAAAAAAGCGGCGGCGCGCATCAGAGCTGTAGAGAGGAGGAATCTGATCACCGTGTgcagGTTCTCCGTGAAGACCCTCATTGATCGCTCATGTTTTGAGACGATAGACGACACGTCTGCTGAGTTCATCAACTTTGTTTCTATTCTAGAACATATTCTGAGCCACAGACTCAAGGGTCAAGTGAGCTGGTTTGGATATGAGAGTCCTCGTAGTTTTTGGGATTTCATCCGCATGGCGTGTAGTAAAGTCCCTCACAGCTGCATCCACAGCATCGAGAACATGGAGAACGTCCGCAGCTCCAGAGCGAAGGGTCGAGCCTGGATTAGAGTGGCGTTAATGGAGAAGCGTTTGTCTGAATACATTTCTGCTGCTCTCAGAGACTTCAAAACTACAAGGAGGTTTTACGAGGAGGGGGCTCTACTTCTGGGGGAGGAGGCTGGGCTTCTGGCGGACACCCTGATTGGCCTGAACGCCATCGACTTTAGCTTCTGCCTGAAGGGGGAGGGGCTTGATGAAGGCTGTCCCGTGGTCATCGACTACACACCTTACCTTAAATTCACTCAAACTTCTGACAGTATCAGCAGTGATGAGGAGGAGATGAGGACGCTGGGCAGCAGCGGCAGTGAAGCAGGAACTCCTGAATCCCACATGGCTGCCAGTCTGATGGCGGATCAGAGCAGCTGGTTCAGCAAGAGCAAGAGGCTGGAGCAGAAATACAGAGTCGTGCTGGAACAGAAGGGTTATCTGGAGGAGCTAGTGCGTCTCAGAGAagctcagctctctgagtctgtcTCTCAGAATAAAGCTCTCCTGCAGCGGCTCACCGACACCGAGATCAGCCACAAACTGGAGAAAGAGCAGCTCGAGATCATCATACTGGAGCTGCAGGATCAGCTGACGGTGTTGAAGAACCATGACCTCCGCTCCAGACAGGAGCTCACCTCGCACCTGACAAACCAGTGGCCTTCACCTGGAGCTCTGGATGGCAATGCCGTGGCTCTCGATACGCTCCTGTACAGAAAACGCACAGGCCCATGGGAAGAgaAGAGTTTCCCGAGTCTGGAGCAGCTTTCTGCAGATATGAGTCTCTCTCAAACATCTCTGGATCCTGTACAACTCAACACACACAGTCTGGACAGCAAAGCAGGACTTGCACACTGGCACAGAGAagGGAAAGAGGACACCCCATCTCTGAGGGGTTTGTGTGGATCTTTGACCTCAATGGCGAGTTACAAATCTCTGGCCAGTCTGAAGTCCAGCGAGTATCTGGCCAGTCCAACAACAGACATGACCAGCCCTGGACTGACCCCGTCCTGAGCACCAAGACTCAAGTATGGACATTTTACACACGCGCATAAACACACGGATGGAGAAACAAAAAGCTAGAGATGAGGCTGGTTTTACTTTCGTTTCAAGTGCAATTTCTTTCTCCTATGTGAATATTTGGTTGTGGAGGTCTAGAGCTACTGTTTGTGATTATTAAGTTATAATGAATGATGATGAACGACAATCTTGACTCAGGAGTGTTTGTGGGGAATTTGCCCAGCTCGAATgacttgctgtttttttttttttttttttttttttttttgcaaaggccATAGATTTCTTGCTCCTGTATGTGAAATTTGTCCTGTGTGGAATTACAGATTTGAACCCCGTTAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-121 Is expressed in brain; gut; habenula; and yolk syncytial layer. Orthologous to human RUNDC3B (RUN domain containing 3B).

Ensembl:

ensembl_id ENSDART00000014140

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022019 lncRNA upstream 29630 43041505 ~ 43048279 (+) False XLOC_010199
TCONS_00022018 lncRNA upstream 29630 43041505 ~ 43048279 (+) False XLOC_010199
TCONS_00022020 lncRNA upstream 29630 43042148 ~ 43048279 (+) False XLOC_010199
TCONS_00022021 lncRNA upstream 29630 43042719 ~ 43048279 (+) False XLOC_010199
TCONS_00022022 lncRNA upstream 29630 43044287 ~ 43048279 (+) False XLOC_010199
TCONS_00022024 lncRNA downstream 955 43119050 ~ 43124236 (+) True XLOC_010201
TCONS_00021749 lncRNA downstream 569058 43687153 ~ 43687568 (+) True XLOC_010208
TCONS_00020211 lncRNA downstream 647884 43765979 ~ 43818565 (+) True XLOC_010209
TCONS_00020220 lncRNA downstream 2084995 45203090 ~ 45206236 (+) True XLOC_010216
TCONS_00020221 lncRNA downstream 2099212 45217307 ~ 45273719 (+) True XLOC_010217
TCONS_00020196 mRNA upstream 234512 42829735 ~ 42843397 (+) False XLOC_010196
TCONS_00020197 mRNA upstream 234939 42830152 ~ 42842970 (+) True XLOC_010196
TCONS_00020191 mRNA upstream 394408 42667560 ~ 42683501 (+) True XLOC_010192
TCONS_00020190 mRNA upstream 582526 42482270 ~ 42495383 (+) True XLOC_010190
TCONS_00020189 mRNA upstream 583564 42481447 ~ 42494345 (+) False XLOC_010190
TCONS_00020203 mRNA downstream 21409 43139504 ~ 43150489 (+) True XLOC_010202
TCONS_00020204 mRNA downstream 34632 43152727 ~ 43284939 (+) False XLOC_010203
TCONS_00020205 mRNA downstream 34644 43152739 ~ 43159418 (+) False XLOC_010203
TCONS_00020206 mRNA downstream 101268 43219363 ~ 43243567 (+) True XLOC_010203
TCONS_00020207 mRNA downstream 226380 43344475 ~ 43346916 (+) True XLOC_010204
TCONS_00020200 other upstream 179399 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020198 other upstream 199898 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020194 other upstream 296515 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020166 other upstream 1529472 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020157 other upstream 2023677 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020214 other downstream 1487231 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020216 other downstream 1564970 44683065 ~ 44687935 (+) True XLOC_010212
TCONS_00020217 other downstream 1586277 44704372 ~ 44705154 (+) True XLOC_010213
TCONS_00020228 other downstream 2470119 45588214 ~ 45588330 (+) True XLOC_010221
TCONS_00020229 other downstream 2548640 45666735 ~ 45666852 (+) True XLOC_010222

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_03117518_03132307.mRNA False 3074 mRNA 0.42 10 CI01000027 3115633 ~ 3132307 (-)