RNA id: TCONS_00020205


Basic Information

Item Value
RNA id TCONS_00020205
length 1440
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_010203
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 43152727 ~ 43284939 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGTGACAGCAGGTGGAGCGAGCTCACACTACACTACCCGTCATCCCGCGTGCACAGCTCGCTCATGTATATTTATGAGGCGTTTCTGCAGTGAGGCGGCTGGATATTATTGATGTCTCGCTGAGGAGGTGGTGGCTTGTGCTCGGCGGAGAAAAAAAGGGCCTGAATTTAGTTTTCCAGAACGACTAGTCATCCGCCCGCCGCTCGCGCAACCCGCGTCTCGATGCAGAGGCTGCTCGCGCTCGCGTCACTAATGGCAACCAGCGCGCGCCAGGATGCGTGTGCCTTTATGAGGGAGACCGAACATCGCGTCTAACTTGGGATTTAACGCGTATATCGAAAATAATTGGGATACATGTGATTAAATGCGATTTTTCTGAATCGAATGGATGCGGGAACGATGCCTCTCCGTGTGGGGATTTCCTTACTGTGCCTCTTCATGAGCTCTGTGGTACATACCAGCATGTCTTTGGCTCATTACGGAGACGCCTTGGTAAAGACGAGGGCTCGGCGTGATGACGCCAGGTACCTCGGGAAAGAGAACACCGTACCAGTCCGGTTAGTCTACCAAATGGACGGAGACCGTCAGACCGCTCATGATGCTGTGAACACACGGATCCGAATGAGATCTGACAGTAAACAGAACCACGTTGCTCAGGCGAGCTTCCAGGTGCAAGCTTTTGGACAGACCTTCATTTTAGACGTAGAGCTGAACCAGTGAGTATCTGCTTTCATGGTGTCATGCTCCTGTATGAGTTCAGAAAAAGTGTGTTTTTGCGAAGTATCCCAGTCGTATGATTAATGGCCGTCAGATCTATTTGCGAGAGGTTTTATGTTGCAGCTGATGGACTGCTATGATCATAATGGCTGTTGATTTATGCTGAAGGATTGGGAAAGTCCTGACCACTCTATTGATCATGTCATATTCTGCTCGCTTTTTCACTTGCTGTCAGGAATTCTTATACTACATGTTGTCTTAATACTGATAAACGTCATTATTTGCAGACTGCAGAGTTGCTTGGTTGACCAGTCAAGAAATGGCTGTTTTggcatttagttattttttagattttgaaTCCAAAATGCATCATTatataccgttgaagtcagaatttctgtttaacggagagcagattttttcaacacatttctaaacataacagttttaataattcatttataataactgatttattttatctttgccatgatgacagtaaataatattttactagatatatttcaagacacttccatacagcttaaagtgacatttaaaagcttaaataggttaattaggctggttagggtaattaggtaaatcattgtataatgatggtttgttctgtaatcaTGCTTGcgagggttaataatattgaccttaagatggatttaaaaaattaaaaactgcttttattctagccaaaataaaacaaataa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0099061 integral component of postsynaptic density membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-070810-1 Predicted to enable metalloendopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of postsynaptic density membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 61. Orthologous to human ADAM22 (ADAM metallopeptidase domain 22).

Ensembl:

ensembl_id ENSDART00000154493

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022024 lncRNA upstream 28503 43119050 ~ 43124236 (+) True XLOC_010201
TCONS_00022020 lncRNA upstream 104460 43042148 ~ 43048279 (+) False XLOC_010199
TCONS_00021749 lncRNA downstream 527735 43687153 ~ 43687568 (+) True XLOC_010208
TCONS_00020211 lncRNA downstream 606561 43765979 ~ 43818565 (+) True XLOC_010209
TCONS_00020220 lncRNA downstream 2043672 45203090 ~ 45206236 (+) True XLOC_010216
TCONS_00020221 lncRNA downstream 2057889 45217307 ~ 45273719 (+) True XLOC_010217
TCONS_00022026 lncRNA downstream 2296562 45455980 ~ 45481848 (+) False XLOC_010220
TCONS_00020203 mRNA upstream 2250 43139504 ~ 43150489 (+) True XLOC_010202
TCONS_00020202 mRNA upstream 34644 43077909 ~ 43118095 (+) True XLOC_010200
TCONS_00020196 mRNA upstream 309342 42829735 ~ 42843397 (+) False XLOC_010196
TCONS_00020197 mRNA upstream 309769 42830152 ~ 42842970 (+) True XLOC_010196
TCONS_00020191 mRNA upstream 469238 42667560 ~ 42683501 (+) True XLOC_010192
TCONS_00020206 mRNA downstream 59945 43219363 ~ 43243567 (+) True XLOC_010203
TCONS_00020207 mRNA downstream 185057 43344475 ~ 43346916 (+) True XLOC_010204
TCONS_00020208 mRNA downstream 188548 43347966 ~ 43350505 (+) True XLOC_010205
TCONS_00020209 mRNA downstream 209154 43368572 ~ 43392455 (+) True XLOC_010206
TCONS_00020210 mRNA downstream 241587 43401005 ~ 43413293 (+) True XLOC_010207
TCONS_00020200 other upstream 254229 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020198 other upstream 274728 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020194 other upstream 371345 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020166 other upstream 1604302 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020157 other upstream 2098507 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020214 other downstream 1445908 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020216 other downstream 1523647 44683065 ~ 44687935 (+) True XLOC_010212
TCONS_00020217 other downstream 1544954 44704372 ~ 44705154 (+) True XLOC_010213
TCONS_00020228 other downstream 2428796 45588214 ~ 45588330 (+) True XLOC_010221
TCONS_00020229 other downstream 2507317 45666735 ~ 45666852 (+) True XLOC_010222

Expression Profile

//