RNA id: TCONS_00020207


Basic Information

Item Value
RNA id TCONS_00020207
length 1294
RNA type mRNA
GC content 0.39
exon number 3
gene id XLOC_010204
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 43344475 ~ 43346916 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCTATTAtacagtgaaagtgaaagtaaatggtTATTTTGTTCAATCTATCAATAATAAAAAGCAGAGGAGAACCCAGTTGTCCTTTAATTAGTAATTAGTTTAATTGATCGCTTTGTAAAGGATTAAGTGTTTATTCAATGTATTTATTACGTTTAATGCACCAGACTGAAAGCAGCACTGCATCACAAACAACAGTGACTCTGCATCAGCGCTTAGTTAAGAATAAACACGTTTAATGTGGGGAACGCtcttctaaataacagttttagAGATTCGCTAAAATATACATGCATTTTATCATCCTAAATTTGTTGAATTTATTGACATTAGGAGGTTTATTACCTGAAAGTGGTGAGAGAGAAACTGTACCCTCTTTCTGCCATGGCTGTGTCTGACTGTTGGGGAAGTGACGCAAGGCGGTTAATTGATCTGATTGGTTCCAAGAGTTACTGCTGTTGCCCAACGAATtgtgggaaatgtagtttaaacttgtttaaaatgttacattttactaTACCGTCCACTAATTTGACTAATAAAGTAGCgaaatatttatttggtgtttatttatttaaacattgaacacattttgctCTCACCCTCTcgcactttctttttttttctttttttaaatcgttGTACTAAAACTCCCAGAATGCAAAGGTGAAAACAACCACGCGCAGGCGTAGTGGGTCTTTTTGAGATTTGACCGTGAAGATGTTTGGACTGTACATGCTGcattgaactgaaataaaatacccAACACAATGACATTATTGGGCTTGCTCCAGTTTCTCGGACGTTCTTTGCATCGTCTGGAACTCCGTTTAGCACAAGCGGCTGGATTTGACAGCTTAGGTCCAGCTCTGGCAGTAAATGGTCCCAGCGTTTTTCCTCAACACAGTCACAACAGCGATGAAGAAAACTCTCAGCCCAGTTTTTTGGACAGTATCTTTTGGATGGCAGCACCTAAAAAGAGACGAACCATTGAAGTGAACCGGTGCAGAAGACGAAAcccaaataaaatgataaaagtcAAGTACAACTTTGAGCCGTGTCTAGAGTGTGGAAACATGAAACTGAAGCACACTCTTTGTGGATTCTGTTATGAAAAGATCAGCAAGGAGACAACCAACATAAGGAGGCAAATGTCTGTGATGGAAGGTGGACCTCTGAAAGCTCCCGCTGTAGAGTCTGTGGTGTTGTATGAAAGTGAAAAGCCCTCTGATGCAGATCAGGGCAAGCGGATAGTCGAACGCAACAGGAAACGTCCATATTGGTTTAGCTTGTGA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko03011 Ribosome
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-060825-188 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL32 (mitochondrial ribosomal protein L32).

Ensembl:

ensembl_id ENSDART00000085282

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022024 lncRNA upstream 220239 43119050 ~ 43124236 (+) True XLOC_010201
TCONS_00022020 lncRNA upstream 296196 43042148 ~ 43048279 (+) False XLOC_010199
TCONS_00021749 lncRNA downstream 340237 43687153 ~ 43687568 (+) True XLOC_010208
TCONS_00020211 lncRNA downstream 419063 43765979 ~ 43818565 (+) True XLOC_010209
TCONS_00020220 lncRNA downstream 1856174 45203090 ~ 45206236 (+) True XLOC_010216
TCONS_00020221 lncRNA downstream 1870391 45217307 ~ 45273719 (+) True XLOC_010217
TCONS_00022026 lncRNA downstream 2109064 45455980 ~ 45481848 (+) False XLOC_010220
TCONS_00020204 mRNA upstream 59536 43152727 ~ 43284939 (+) False XLOC_010203
TCONS_00020206 mRNA upstream 100908 43219363 ~ 43243567 (+) True XLOC_010203
TCONS_00020205 mRNA upstream 185057 43152739 ~ 43159418 (+) False XLOC_010203
TCONS_00020203 mRNA upstream 193986 43139504 ~ 43150489 (+) True XLOC_010202
TCONS_00020202 mRNA upstream 226380 43077909 ~ 43118095 (+) True XLOC_010200
TCONS_00020208 mRNA downstream 1050 43347966 ~ 43350505 (+) True XLOC_010205
TCONS_00020209 mRNA downstream 21656 43368572 ~ 43392455 (+) True XLOC_010206
TCONS_00020210 mRNA downstream 54089 43401005 ~ 43413293 (+) True XLOC_010207
TCONS_00020212 mRNA downstream 951986 44298902 ~ 44325675 (+) False XLOC_010210
TCONS_00020213 mRNA downstream 967181 44314097 ~ 44325688 (+) True XLOC_010210
TCONS_00020200 other upstream 445965 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020198 other upstream 466464 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020194 other upstream 563081 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020166 other upstream 1796038 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020157 other upstream 2290243 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020214 other downstream 1258410 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020216 other downstream 1336149 44683065 ~ 44687935 (+) True XLOC_010212
TCONS_00020217 other downstream 1357456 44704372 ~ 44705154 (+) True XLOC_010213
TCONS_00020228 other downstream 2241298 45588214 ~ 45588330 (+) True XLOC_010221
TCONS_00020229 other downstream 2319819 45666735 ~ 45666852 (+) True XLOC_010222

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_02989304_02990854.mRNA True 540 mRNA 0.44 3 CI01000027 2989289 ~ 2990854 (-)