Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00020209 |
| length | 1769 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 8 |
| gene id | XLOC_010206 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 43368572 ~ 43392455 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0032436 | positive regulation of proteasomal ubiquitin-dependent protein catabolic process | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0000209 | protein polyubiquitination | biological_process |
| GO:0000151 | ubiquitin ligase complex | cellular_component |
| GO:0031966 | mitochondrial membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0031624 | ubiquitin conjugating enzyme binding | molecular_function |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-1292 | Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of ubiquitin ligase complex. Predicted to be active in mitochondrial membrane. Orthologous to human RNF144B (ring finger protein 144B). |
| ensembl_id | ENSDART00000193897 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00022024 | lncRNA | upstream | 244336 | 43119050 ~ 43124236 (+) | True | XLOC_010201 |
| TCONS_00022020 | lncRNA | upstream | 320293 | 43042148 ~ 43048279 (+) | False | XLOC_010199 |
| TCONS_00021749 | lncRNA | downstream | 294698 | 43687153 ~ 43687568 (+) | True | XLOC_010208 |
| TCONS_00020211 | lncRNA | downstream | 373524 | 43765979 ~ 43818565 (+) | True | XLOC_010209 |
| TCONS_00020220 | lncRNA | downstream | 1810635 | 45203090 ~ 45206236 (+) | True | XLOC_010216 |
| TCONS_00020221 | lncRNA | downstream | 1824852 | 45217307 ~ 45273719 (+) | True | XLOC_010217 |
| TCONS_00022026 | lncRNA | downstream | 2063525 | 45455980 ~ 45481848 (+) | False | XLOC_010220 |
| TCONS_00020208 | mRNA | upstream | 18067 | 43347966 ~ 43350505 (+) | True | XLOC_010205 |
| TCONS_00020207 | mRNA | upstream | 21656 | 43344475 ~ 43346916 (+) | True | XLOC_010204 |
| TCONS_00020204 | mRNA | upstream | 83633 | 43152727 ~ 43284939 (+) | False | XLOC_010203 |
| TCONS_00020206 | mRNA | upstream | 125005 | 43219363 ~ 43243567 (+) | True | XLOC_010203 |
| TCONS_00020205 | mRNA | upstream | 209154 | 43152739 ~ 43159418 (+) | False | XLOC_010203 |
| TCONS_00020210 | mRNA | downstream | 8550 | 43401005 ~ 43413293 (+) | True | XLOC_010207 |
| TCONS_00020212 | mRNA | downstream | 906447 | 44298902 ~ 44325675 (+) | False | XLOC_010210 |
| TCONS_00020213 | mRNA | downstream | 921642 | 44314097 ~ 44325688 (+) | True | XLOC_010210 |
| TCONS_00020215 | mRNA | downstream | 1285847 | 44678302 ~ 44687969 (+) | False | XLOC_010212 |
| TCONS_00020218 | mRNA | downstream | 1375906 | 44768361 ~ 44780744 (+) | True | XLOC_010214 |
| TCONS_00020200 | other | upstream | 470062 | 42898429 ~ 42898510 (+) | False | XLOC_010198 |
| TCONS_00020198 | other | upstream | 490561 | 42876446 ~ 42878011 (+) | True | XLOC_010197 |
| TCONS_00020194 | other | upstream | 587178 | 42772712 ~ 42781394 (+) | False | XLOC_010194 |
| TCONS_00020166 | other | upstream | 1820135 | 41546763 ~ 41548437 (+) | True | XLOC_010175 |
| TCONS_00020157 | other | upstream | 2314340 | 41042310 ~ 41054232 (+) | False | XLOC_010166 |
| TCONS_00020214 | other | downstream | 1212871 | 44605326 ~ 44605440 (+) | True | XLOC_010211 |
| TCONS_00020216 | other | downstream | 1290610 | 44683065 ~ 44687935 (+) | True | XLOC_010212 |
| TCONS_00020217 | other | downstream | 1311917 | 44704372 ~ 44705154 (+) | True | XLOC_010213 |
| TCONS_00020228 | other | downstream | 2195759 | 45588214 ~ 45588330 (+) | True | XLOC_010221 |
| TCONS_00020229 | other | downstream | 2274280 | 45666735 ~ 45666852 (+) | True | XLOC_010222 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000027_02961909_02972343.mRNA | True | 1062 | mRNA | 0.51 | 7 | CI01000027 | 2961764 ~ 2972343 (-) |
