RNA id: TCONS_00020210


Basic Information

Item Value
RNA id TCONS_00020210
length 2093
RNA type mRNA
GC content 0.49
exon number 11
gene id XLOC_010207
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 43401005 ~ 43413293 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agcataaattaTTCAGCATCACCTAGAAGCATCTCACCAGCTCGAGTGCGCCCATGTGCTGGGGATTAaacttactttttatttattattatttattataaaaggaATTTAACTGAAGTCGAGCCCGAGATTAATCGGAAAACGGAtactatatgttttttttccactttttgtGTCTGTCTGGAATAATTCAGTTAATTTTCAGATCACCTGTGCTGCTCTTTTGTGATATTTTTAAACGCCATTAAGCGATATTTTGTGTCTGTTTATAATTGAAGCGAGTGTCGACATGTGGACCTTTCTTGGCATAGCGAGTTTTACATATATCTATAAGAAATGCGACGCGCTGCTGAGCTCCGCGACTACAGAGCTGCTGGTGGCCGCGGTGCTGTGCGTGTCTGTGGGGCTCATCATCACCTGTTTCTCCCTCCGCGGACAGACTCTCAAAGCGCCGCAGTTTTTACAAATGCCTTTTCAACTCTTGATGACATTTTCCCCCACCAAAAAACTCTTCTCCGCGTCCAGCACTGATAGTTGTAGTCGCTCTTCTAAGAAGAGAGATGTAAAGCGAAAGAGGGCGACGGACAGTCAGTGCAGTCCAACTGAGGATCCGGAGGTCATCATAGTGGGAGCTGGGGTGCTAGGATCGGCCATGGCTGCTGTTCTGGCCCGGGATGGACGGCGGGTCACCGTGGTGGAGAGGGACATGAAAGAACCAGACCGAATAGTTGGAGAACTTCTGCAGCCGGGAGGATTTCGGGTACTCAAAGACCTTGGCCTGGAGGGTACTGTTGAGGGTCTGGATGCTCATGTGGTGAACGGTTATGTAATCCATGACATGGAAAGTAGGACAGAGGTGGAGATCCCATATCCCCAGCAGGAGAACTGCATTCAGGGTGGACGTGCTTTCCATCATGGGCGCTTCATCATGGGGTTGCGTCGAGCTGCCCTCGCTGAGCCTAATGTGAAGTTTGTGGAGGGAACAGTGACCAGCCTGGAGGAGGAGGAAGGTTGTGTGACAGGAATTCAGTACAGGGAGAAAGACACCGGGATGCTCAAGGAGGTTCGCGCTCCTCTGACTATAGTCGCTGATGGCTGTTTCTCCAAGTTCAGGAAGAATCTGGTTTCTGGGAAAGTTCGGGTGTCGTCGCATTTTGTTGGATGCATAATGAAGGACTCTCCTCAGTTCAAAGCCCACCATGCAGAGCTAGTTCTAGCTGATCCCAGTCCAGTGCTGATCTACCAGATCTCCTCCAATGAAACTCGTGTTCTGGTGGACATCAGAGGAGAGATGCCACGGGACCTCATGCAGTACATGACTGACAAAATCTACCCACAGCTACCAGAgcacttaaaggagccgttcaTGCTGGCACTGCAGAACGACCGGTTGAGAACGATGCCTGCCAGCTTTCTGCCACCCGCACCAGTCAATAAACAAGGGGTTCTGCTGTTAGGAGATGCGTATAACATGCGTCATCCTCTGACCGGCGGAGGCATGAGTGTTGTGCTGAATGACGTCTCCATCTGGAGAGACCTGCTCAAGAACATTCCTGACCTCTATGACAATACAGCTTTGCTCCAGgcGAAGAAGAAATTCCACTGGGAGCGGAAATCCTCTCACTCGTTTGTGGTGAACGTTTTGGCTCAAGCGTTATACGAGCTGTTTGCTGCGACTGACAAATCACTGCATCAGCTACGAAAAGCATGCTTTCACTATTTCAAGCTCGGTGGAGAATGCATCAATGGACCAATCGGGCTCCTGTCTGTGTTGTCGCCAAAACCCTTGACTCTGATTGGACACTTTTTTGCCGTGGCCCTGTACGCTATATACTTCAGCTTCAAGTCTGAATCCTGGCTCACAATACCACGAGCACTGGTCAACAGCGCAGCCATCCTGTACAGAGCCTGTGCCGTCATGTTTCCTCTCATATACTCGGAGTTACAGTACCTGGTTTACTAGAAAAAGAGACTGATTTTAAATTTGCTGCGACACATCTGCCTTTAGTGCTTACATCCAAGTGCCTCATTTACTTTGAGGGGAAAAAAGGGATTCATGTcagataaaacacaataaaaggaGCGAGTCTCAG

Function

GO:

id name namespace
GO:0016126 sterol biosynthetic process biological_process
GO:0008203 cholesterol metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004506 squalene monooxygenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-98 Predicted to enable squalene monooxygenase activity. Predicted to be involved in cholesterol metabolic process and sterol biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human SQLE (squalene epoxidase).

Ensembl:

ensembl_id ENSDART00000110994

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022024 lncRNA upstream 276769 43119050 ~ 43124236 (+) True XLOC_010201
TCONS_00022020 lncRNA upstream 352726 43042148 ~ 43048279 (+) False XLOC_010199
TCONS_00021749 lncRNA downstream 273860 43687153 ~ 43687568 (+) True XLOC_010208
TCONS_00020211 lncRNA downstream 352686 43765979 ~ 43818565 (+) True XLOC_010209
TCONS_00020220 lncRNA downstream 1789797 45203090 ~ 45206236 (+) True XLOC_010216
TCONS_00020221 lncRNA downstream 1804014 45217307 ~ 45273719 (+) True XLOC_010217
TCONS_00022026 lncRNA downstream 2042687 45455980 ~ 45481848 (+) False XLOC_010220
TCONS_00020209 mRNA upstream 8550 43368572 ~ 43392455 (+) True XLOC_010206
TCONS_00020208 mRNA upstream 50500 43347966 ~ 43350505 (+) True XLOC_010205
TCONS_00020207 mRNA upstream 54089 43344475 ~ 43346916 (+) True XLOC_010204
TCONS_00020204 mRNA upstream 116066 43152727 ~ 43284939 (+) False XLOC_010203
TCONS_00020212 mRNA downstream 885609 44298902 ~ 44325675 (+) False XLOC_010210
TCONS_00020213 mRNA downstream 900804 44314097 ~ 44325688 (+) True XLOC_010210
TCONS_00020215 mRNA downstream 1265009 44678302 ~ 44687969 (+) False XLOC_010212
TCONS_00020218 mRNA downstream 1355068 44768361 ~ 44780744 (+) True XLOC_010214
TCONS_00020219 mRNA downstream 1493031 44906324 ~ 44917748 (+) True XLOC_010215
TCONS_00020200 other upstream 502495 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020198 other upstream 522994 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020194 other upstream 619611 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020166 other upstream 1852568 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020157 other upstream 2346773 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020214 other downstream 1192033 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020216 other downstream 1269772 44683065 ~ 44687935 (+) True XLOC_010212
TCONS_00020217 other downstream 1291079 44704372 ~ 44705154 (+) True XLOC_010213
TCONS_00020228 other downstream 2174921 45588214 ~ 45588330 (+) True XLOC_010221
TCONS_00020229 other downstream 2253442 45666735 ~ 45666852 (+) True XLOC_010222

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_02950348_02954214.mRNA True 1286 mRNA 0.46 8 CI01000027 2950106 ~ 2954214 (-)