RNA id: TCONS_00020211


Basic Information

Item Value
RNA id TCONS_00020211
length 5677
lncRNA type inter_gene
GC content 0.34
exon number 11
gene id XLOC_010209
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 43765979 ~ 43818565 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGCTTCCGTTAATGCGGAAGTCTCTCTTTGCTGTTCAGGACTTTCATTCAAACATATGTGATATCATGTGTTTTCTGTTCTGTGGGTGAAGTGCACTCAAAACTGTAAAATGTTGCGCAAAAGGACTAACGGACGAGAAGATGCGGACAATGGCAATAAACCTGAGAGAAAGAAGACCCCAGAGGACTATAGTGTTACTGGTTCGACTGTCTCTCAGAAGAGCTGCTGGGCTGTTGTGTCTTTTTGGATGAAGGTTTTGCTCTTCGTCATCTTCACTCCAGCTTTCTTGAACTATGCCTCCCTGCAAAGAGAAGGACAGGTGTTGTCACCCACAGATGCTCATCTAATTGATATCGGCCTCGGAGAAAAGATCCATTTACACTGTAAAGGACATGGGCAACCAGTTGtCATTCTTGATGCTCCAGCAGGGATGTCTTCAGATATTTGGTTTCATGTGCAAGAGAGTCTTTCGTTTTCAACAAAGGTGTGCACTTACGACAGAGCTGGTCTGGGTTTTAGCCGAAGAGCCCTGCAGAATGAAACTACAGGCACAGAGAAGGTCTGGAGATTATCAACTACGGGCAGGATGGTGGATGACCTTCACCGATTGGTCAAGGCTGCAGATTTAGCCACAcccttcattctgattggctcTGAGCTAGGAACTCTCAACGGCAGGTTCTACAGCCACATTCATGATACGCAAGTGTCTGACCTGGTGCTGATCGATCCAATCCCCGAGGACGTCTTTGAGGAGCAGAAGTGGCAGCAGTTCTGgtACTCTCAGCTCATCCCATCTCTGCAGATGATGCAGTTCTCCGCAGCCGCAGGTTTGAGTCGTCTGCTCATTATTCTGGGTGTGCTGAAGCCGCTCATTCAGGGTGAACACATCTCGGAGGAGCTCCTGCAGCGACAGAAATATCTGCTGTGTAACCCTGCCCACCAGAGCGCTGCAGTGGATGAGCATTTCTTCCTCAATGAAAGCGCATCTCAAGTCAGCGAGATCTCCAGATATAAGCCTCTCTCCAGCAAGACATCTGTGCATGTGATCACGGGGGAATCGTTTGATGATCAGCTTCCTTCAGATCTCAACCGAGTGCTCGCCGAACTTCAGAGCAAGTTTTTGGAGCGCTCTTATCCCAATGCAAATCGCATTCAGATTCACGGGGCGGATCGGCACATGATCTACAAAAATCCATCTTCGCTTATCAAACATTTGCATAAGCTCGTGGCGCAAAGGCAGACCAACCAACAGAGGCAGTGAGATGCTTTGGAAAATGCAGACTTTCTTATAGCAAACATTGTCATTCTTCTCAGTATGAAGGTGGAATCTGTCTAGTTTGTTGGTGGATTGTGTATTTTGATgaactgctgaaaaaaataattgattgtttttgtgttttaggtTAAAATACCTTATTAGAAATGCAGCAACTTATCAAAAATGCCTCAGTTTGAtgcctcaatttttttttttagaaatgcatAACCCAAATTCATTACATAAATGTCATTTTTCTTCTTATGTAGACAGCTGTTACTTTCTATCTTCAATAATGCAAGATGCTAAATAACATTTTTCTGCGTATGAAGCAGGAATCTGTAGTTTGTTGATGGATTGTGCATTTTGATGAACTGctgaagaaaataattaattgtttctgtatttttgatgagaAAGCCTTATTAGAAATATAGTAACTTGTCAAAAACGCCTCAGTTAGAAATGTTGTATTGGAAAAATAATgctaaagaacttttttttttaagcatcaaaATTTTGGTCagaatttatttagaaaatatctgCCCTCAAATATTTGATGAACGCATAACCAGCCCAAATTCTTTACATAAACGCTGTCATTTTACTGCCTAGGAAGCAGAATTCTGTCTAGTTTGTTGGTGGATTGTGCAGTTTGATGAACTGCTGACCAAAATGATTgattgtttctgtgtttttggtTAAAATGCATGATTAGAAATGCGGTAACTTGTCAAAAACACCTCAATTTGACGcctcacatattttttttaatgcataaccaacccaaattctttaattaaatgctgTAATTTTCCTACTTATGTAGAGTTTAGTAACAGTCACAGCTGCCAATTTCTGTCTTCAATGATCCAAGATGCCAAATAACTTTGTCATTCTTCTGAGTATGAAGCTGAAATCTGTCTAGTTTGTTGGTGGATTGTGTAATTTGATgaactgctgaaaaaaataattgattgtttttgtgttttaggttaaaatacattattagaaATGCAGCAACTTATCAAAAATGCCTCAGTTTgatgccttaattttttttttttagaaatgcatAACCCAAATTCATTACATAAATGTCATTTTTCTTCTTATGTAGACAGCTGTTACTTTCTATCTTCAATAATGCAAGATGCTAAATAACATTTTTCTGCGTATGAAGCAGGAATCTGTAGTTTGTTGATGGATTGTGCATTTTGATGAACTGctgaagaaaataattaattgtttctgtatttttgatgagaAAGCCTTATTAGAAATATAGTAACTTGTCAAAAACGCCTCAGTTAGAAATGTTGTATTGGAAAAATAATgctaaagaacttttttttttaagcatcaaaATTTTGGTCagaatttatttagaaaatatctgCCCTCAAATATTTGATGAACGCATAACCAGCCCAAATTCTTTACATAAACGCTGTCATTTTACTGCCTAGGAAGCAGAATTCTGTCTAGTTTGTTGGTGGATTGTGCAGTTTGATGAACTGCTGACCAAAATGATTgattgtttctgtgtttttggtTAAAATGCATGATTAGAAATGCGGTAACTTGTCAAAAACACCTCAATTTGACGcctcacatattttttttaatgcataaccaacccaaattctttaattaaatgctgTAATTTTCCTACTTATGTAGAGTTTAGTAACAGTCACAGCTGCCAATTTCTGTCTTCAATGATCCAAGATGCCAAATAACTTTGTCATTCTTCTGAGTATGAAGCTGAAATCTGTCTAGTTTGTTGGTGGATTGTGTAATTTGATgaactgctgaaaaaaataattgattgtttttgtgttttaggttaaaatacattattagaaATGCAGCAACTTATCAAAAATGCCTCAGTTTgatgccttaatttttttttttagaaatgcatAACCCAAATTCATTACATAAATGTCATTTTTCTTCTTATGTAGACAGCTGTTACTTTCTATCTTCAATAATGCAAGATGCTAAATAACATTTTTCTGCGTATGAAGCAGGAATCTGTAGTTTGTTGATGGATTGTGCATTTTGATGAACTGctgaagaaaataattaattgtttctgtatttttgatgagaAAGCCTTATTAGAAATATAGTAACTTGTCAAAAACGCCTCAGTTAGAAATGTTGTATTGGAAAAATAATgctaaagaactttttttttttaagcatcaaaATTTTGGTCagaatttatttagaaaatatctgCAATCAAATATTTGATGAACGCATAACCAGCCCAAATTCTTTACATAAACGCTGTCATTTTACTGCCTAGGAAGCAGAATTCTGTCTAGTTTGTTGGTGGATTGTGCAGTTTGATGAACTGCTGACCAAAATGATTgattgtttctgtgtttttggtTAAAATGCATGATTAGAAATGCGGTAACTTGTCAAAAACACCTCAATTTGACGcctcacatatttttttttaatgcataaccaacccaaattctttaattaaatgctgTAATTTTCCTACTTATGTAGAGTTTAGTAACAGTCACAGCTGCCAATTTCTGTCTTCAATGATCCAAGATGCCAAATAACTTTGTCATTCTTCTGAGTATGAAGCTGAAATCTGTCTAGTTTGTTGGTGGATTGTGTATTTTGATGTACTGCTAAAGAAAATAATTGATCGATTCTTTGTTTTTAGTTAAACTAAGTTATTAGTCAAAAACACCTCAATTACAAATGTTTTGCATTGAAAATTAAGCCTAAATATCTTTTCTAAGCATCAACATTTTCGTTGTAATTAGTTACAATATCAGCTCTCAAATATTTCATAAATGCATAACCAACCCAAATTCTTTACTTTAATGCTGTAATGTTACGACTTATGTAGCAGAAATCTGTCATTTGTTGATGGATTGTGCATTTTGATGAactgctgaaaaaaattattgatcGTTTCCATGTTTTTGGTTAAAATAGAACTTGTCAAAAATTCCCTTAAATATTTTGCATTGAAAATTAACCCAGTGAACTTTTTTTAAGCATTAACATTTTTGTTGTAATTTGTCTATAAAATATCAGTcctcaaatattttataaaagtatAAACAACCCAAACTCTTTACTTAAATGTTGTCATTTTTCTACTTATGAAACAGAAATATATGTAGCTTGTTGGTGGATTAATCATTTTGATTAACTGCTGAAGAAATAATTTTACTGcttgttcttttttgttttgttttgttaaaaagccTTATTAGAAATGGAGTAACTTATCAAATACACCAAATTTTCACCTCGAGTAATTAGAAATGTTTCGCAATGAAAAATAACCCTAAGTGTCAacatttttgtcataatttacttaGAAAATACCTgcattcaaatattttataaatgcataaCCAACTCAAATTCTTTACGTAAATGCTGTCATTTACCTACTTATGAAGAAGAAATTTGTAGTTTGTTGGTGAAATGTGCATTTTGATGAACTGCTGAAGAAAACTATTgatcctttgtttgtttgtttttttgtttaaaatgcgTTATTAGAAATGCAATAACTTGTCAACAAGCATCAACATTTTTGTTGTAATTTACTCATAAAATATTTGCcctcaaatattttataaatgcataaCCAACCCAAATTCGTTACATAAACACTGTAATTTTTCTACTTATGAAACAGAAATCTGTCTAGTTTGTTGATAGATTTTGCATTTTGATgaactgctgaaaaaaatattagatttcTGTATTTTTGGTTAAAATGCATTATTAGAAATTCAGTAACTTGTTAAAAACGCCTCCGTTAGAAATGTTTTGCATTGAAGAATAACCCTAAAGAAAATAACCCTTTTTTTAAGCATCAACATTTTTGTTGTAAGTACTGTAGTTTACACAATATCAGCcctcaaatattttataaatgcataaCCAAGCCAAATTCTTTATTTAAATGCTGTCATTTTACTACTTATTAAGCCGAAATATGTGTAGGTGGATTACACATTTTGATTTACTgataaaaaatactttactggctgttttttttaagccTTATTAGAAATGCAGTAACTTGTCAAAAGCGCATCAGTTAGAAATGTTTTGCAATGAAAAATAACCCTAAGCGTCAACATTTTTGTCATAATCAAACTGCATAACAAACTCAAATTCTTTATGTTAACGCTGTCATTTTTTAATGAAGCAGAAATCTGTCTAGTTTGTTAGTGGATTGTGCATTTTGATTAAAAGGTAACTAAATTATTTTACTGCCtttatgttttttgttaaaaagctttattaaaaatgcagtaaCTTGTCAAAAACATCTAATTTTCACCCTGAATAATTAGAACTGTTGCATTGAAAAATAAACCTAAAGAACTTTTCGAAGcatc

Function

GO:

id name namespace
GO:0051146 striated muscle cell differentiation biological_process
GO:0043038 amino acid activation biological_process
GO:0043039 tRNA aminoacylation biological_process
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0006457 protein folding biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0016875 ligase activity, forming carbon-oxygen bonds molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021749 lncRNA upstream 78411 43687153 ~ 43687568 (+) True XLOC_010208
TCONS_00022024 lncRNA upstream 641743 43119050 ~ 43124236 (+) True XLOC_010201
TCONS_00022020 lncRNA upstream 717700 43042148 ~ 43048279 (+) False XLOC_010199
TCONS_00020220 lncRNA downstream 1384525 45203090 ~ 45206236 (+) True XLOC_010216
TCONS_00020221 lncRNA downstream 1398742 45217307 ~ 45273719 (+) True XLOC_010217
TCONS_00022026 lncRNA downstream 1637415 45455980 ~ 45481848 (+) False XLOC_010220
TCONS_00022025 lncRNA downstream 1637415 45455980 ~ 45481848 (+) False XLOC_010220
TCONS_00022027 lncRNA downstream 1968477 45787042 ~ 45812324 (+) False XLOC_010225
TCONS_00020210 mRNA upstream 352686 43401005 ~ 43413293 (+) True XLOC_010207
TCONS_00020209 mRNA upstream 373524 43368572 ~ 43392455 (+) True XLOC_010206
TCONS_00020208 mRNA upstream 415474 43347966 ~ 43350505 (+) True XLOC_010205
TCONS_00020207 mRNA upstream 419063 43344475 ~ 43346916 (+) True XLOC_010204
TCONS_00020206 mRNA upstream 522412 43219363 ~ 43243567 (+) True XLOC_010203
TCONS_00020212 mRNA downstream 480337 44298902 ~ 44325675 (+) False XLOC_010210
TCONS_00020213 mRNA downstream 495532 44314097 ~ 44325688 (+) True XLOC_010210
TCONS_00020215 mRNA downstream 859737 44678302 ~ 44687969 (+) False XLOC_010212
TCONS_00020218 mRNA downstream 949796 44768361 ~ 44780744 (+) True XLOC_010214
TCONS_00020219 mRNA downstream 1087759 44906324 ~ 44917748 (+) True XLOC_010215
TCONS_00020200 other upstream 867469 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020198 other upstream 887968 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020194 other upstream 984585 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020166 other upstream 2217542 41546763 ~ 41548437 (+) True XLOC_010175
TCONS_00020157 other upstream 2711747 41042310 ~ 41054232 (+) False XLOC_010166
TCONS_00020214 other downstream 786761 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020216 other downstream 864500 44683065 ~ 44687935 (+) True XLOC_010212
TCONS_00020217 other downstream 885807 44704372 ~ 44705154 (+) True XLOC_010213
TCONS_00020228 other downstream 1769649 45588214 ~ 45588330 (+) True XLOC_010221
TCONS_00020229 other downstream 1848170 45666735 ~ 45666852 (+) True XLOC_010222

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_02742168_02773304.mRNA True 1149 mRNA 0.48 11 CI01000027 2742168 ~ 2773304 (-)