RNA id: TCONS_00020217



Basic Information


Item Value
RNA id TCONS_00020217
length 490
RNA type processed_transcript
GC content 0.45
exon number 2
gene id XLOC_010213
representative True

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 44704372 ~ 44705154 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CATCGTGCAGGATATAGCAAGACATTGTTCCAGCATACCTACAGGATTCATGGAGTTTATTGCTGCCTGCTGGTCCCCTCAATATGTTGTAGAAGAGATCCAGCATACAGTGGATGAGATTCTGGACCAGCCGTGGCTAAGAAACTAGTGAAAATAAAGACTGTTTTAGTCAATTGATGAACATGAGGAGTTTATGCTTTCCAAGTGGTTCAGCATGACGTAGAGCCCATCAGAAGCAGGAAACAGGTTTTCAGACTTCCATTTATGTCACATTGTTTTGCTGTTTTCCGCTTCTGCTTCCCAAATTCTGCACTTCCTCCTGCGAGTGTTGCAGTCAGAGCTGCATGTAAATGAGGGCCGGTTTCAGTCTAGTCCACCAGCTCTCGACTGAAAGCTCCTCCTCCAGCCAATCACGCGAGGAGGAAAGCTGATGTCACTGTAATGGCTCTTATcctaaaacatattttgttggaatgtgGAAGTTTGAATG

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154582

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00020211 lncRNA upstream 885807 43765979 ~ 43818565 (+) True XLOC_010209
TCONS_00021749 lncRNA upstream 1016804 43687153 ~ 43687568 (+) True XLOC_010208
TCONS_00022024 lncRNA upstream 1580136 43119050 ~ 43124236 (+) True XLOC_010201
TCONS_00022022 lncRNA upstream 1656093 43044287 ~ 43048279 (+) False XLOC_010199
TCONS_00020220 lncRNA downstream 497936 45203090 ~ 45206236 (+) True XLOC_010216
TCONS_00020221 lncRNA downstream 512153 45217307 ~ 45273719 (+) True XLOC_010217
TCONS_00022026 lncRNA downstream 750826 45455980 ~ 45481848 (+) False XLOC_010220
TCONS_00022025 lncRNA downstream 750826 45455980 ~ 45481848 (+) False XLOC_010220
TCONS_00022027 lncRNA downstream 1081888 45787042 ~ 45812324 (+) False XLOC_010225
TCONS_00020215 mRNA upstream 16403 44678302 ~ 44687969 (+) False XLOC_010212
TCONS_00020213 mRNA upstream 378684 44314097 ~ 44325688 (+) True XLOC_010210
TCONS_00020212 mRNA upstream 378697 44298902 ~ 44325675 (+) False XLOC_010210
TCONS_00020210 mRNA upstream 1291079 43401005 ~ 43413293 (+) True XLOC_010207
TCONS_00020209 mRNA upstream 1311917 43368572 ~ 43392455 (+) True XLOC_010206
TCONS_00020218 mRNA downstream 63207 44768361 ~ 44780744 (+) True XLOC_010214
TCONS_00020219 mRNA downstream 201170 44906324 ~ 44917748 (+) True XLOC_010215
TCONS_00020222 mRNA downstream 632509 45337663 ~ 45357518 (+) False XLOC_010218
TCONS_00020223 mRNA downstream 632566 45337720 ~ 45356910 (+) True XLOC_010218
TCONS_00020224 mRNA downstream 719753 45424907 ~ 45440643 (+) False XLOC_010219
TCONS_00020216 other upstream 16437 44683065 ~ 44687935 (+) True XLOC_010212
TCONS_00020214 other upstream 98932 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020200 other upstream 1805862 42898429 ~ 42898510 (+) False XLOC_010198
TCONS_00020198 other upstream 1826361 42876446 ~ 42878011 (+) True XLOC_010197
TCONS_00020194 other upstream 1922978 42772712 ~ 42781394 (+) False XLOC_010194
TCONS_00020228 other downstream 883060 45588214 ~ 45588330 (+) True XLOC_010221
TCONS_00020229 other downstream 961581 45666735 ~ 45666852 (+) True XLOC_010222
TCONS_00020265 other downstream 2307187 47012341 ~ 47012457 (+) True XLOC_010251
TCONS_00020272 other downstream 3318139 48023293 ~ 48023408 (+) True XLOC_010259
TCONS_00020273 other downstream 3453155 48158309 ~ 48158423 (+) True XLOC_010260

Expression Profile


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