Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00001597 |
| length | 1173 |
| lncRNA type | sense_over |
| GC content | 0.51 |
| exon number | 3 |
| gene id | XLOC_001004 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 8649099 ~ 8653385 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005884 | actin filament | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0015629 | actin cytoskeleton | cellular_component |
| GO:0097433 | dense body | cellular_component |
| GO:0005925 | focal adhesion | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0098973 | structural constituent of postsynaptic actin cytoskeleton | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00001590 | lncRNA | downstream | 24843 | 8615853 ~ 8625266 (-) | False | XLOC_001002 |
| TCONS_00002917 | lncRNA | downstream | 25167 | 8612575 ~ 8624942 (-) | False | XLOC_001002 |
| TCONS_00003335 | lncRNA | downstream | 25227 | 8622702 ~ 8624882 (-) | True | XLOC_001002 |
| TCONS_00001589 | lncRNA | downstream | 31465 | 8615535 ~ 8618644 (-) | False | XLOC_001002 |
| TCONS_00003334 | lncRNA | downstream | 62750 | 8579155 ~ 8587359 (-) | True | XLOC_001001 |
| TCONS_00003336 | lncRNA | upstream | 321852 | 8974500 ~ 8977960 (-) | False | XLOC_001008 |
| TCONS_00001604 | lncRNA | upstream | 321852 | 8974500 ~ 8977963 (-) | True | XLOC_001008 |
| TCONS_00003337 | lncRNA | upstream | 326257 | 8978905 ~ 8980671 (-) | False | XLOC_001009 |
| TCONS_00003338 | lncRNA | upstream | 429194 | 9081842 ~ 9082772 (-) | True | XLOC_001010 |
| TCONS_00003339 | lncRNA | upstream | 485990 | 9138638 ~ 9139160 (-) | True | XLOC_001015 |
| TCONS_00001591 | mRNA | downstream | 3168 | 8638162 ~ 8646941 (-) | True | XLOC_001003 |
| TCONS_00001588 | mRNA | downstream | 83542 | 8555323 ~ 8566567 (-) | True | XLOC_001000 |
| TCONS_00001582 | mRNA | downstream | 96814 | 8539671 ~ 8553295 (-) | False | XLOC_000999 |
| TCONS_00001585 | mRNA | downstream | 96944 | 8549849 ~ 8553165 (-) | False | XLOC_000999 |
| TCONS_00001579 | mRNA | downstream | 221348 | 8415983 ~ 8428761 (-) | False | XLOC_000997 |
| TCONS_00001599 | mRNA | upstream | 20413 | 8673061 ~ 8691969 (-) | True | XLOC_001005 |
| TCONS_00001600 | mRNA | upstream | 110781 | 8763429 ~ 8928841 (-) | False | XLOC_001006 |
| TCONS_00001601 | mRNA | upstream | 112976 | 8765624 ~ 8917902 (-) | True | XLOC_001006 |
| TCONS_00001602 | mRNA | upstream | 309976 | 8962624 ~ 8966046 (-) | False | XLOC_001007 |
| TCONS_00001603 | mRNA | upstream | 310205 | 8962853 ~ 8963484 (-) | True | XLOC_001007 |
| TCONS_00001587 | other | downstream | 96811 | 8552750 ~ 8553298 (-) | True | XLOC_000999 |
| TCONS_00001570 | other | downstream | 674340 | 7970406 ~ 7975769 (-) | True | XLOC_000989 |
| TCONS_00001564 | other | downstream | 729903 | 7920119 ~ 7920206 (-) | True | XLOC_000985 |
| TCONS_00001563 | other | downstream | 730542 | 7919480 ~ 7919567 (-) | True | XLOC_000984 |
| TCONS_00001562 | other | downstream | 731227 | 7918795 ~ 7918882 (-) | False | XLOC_000984 |
| TCONS_00001610 | other | upstream | 465452 | 9118100 ~ 9118671 (-) | False | XLOC_001012 |
| TCONS_00001617 | other | upstream | 545211 | 9197859 ~ 9197966 (-) | True | XLOC_001018 |
| TCONS_00001629 | other | upstream | 807362 | 9460010 ~ 9486080 (-) | False | XLOC_001025 |
| TCONS_00001646 | other | upstream | 1088154 | 9740802 ~ 9816875 (-) | True | XLOC_001029 |
| TCONS_00001656 | other | upstream | 1410853 | 10063501 ~ 10064568 (-) | False | XLOC_001036 |
