RNA id: TU538102


Basic Information

Item Value
RNA id TU538102
length 299
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G468828
representative True

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 10351998 ~ 10352296 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGACCATTAAGGTCAGTGAACAAATATGAGTACAGCCAGATGAGTACAGTTTAATCAGTTTCATATCAATATGACATAAATGTAATATGATTGTTTAATATATTTGTTTTGTTTTTTATTTTCCATGTTAAAATCACTAATCCGTTTAAATACAGGTCATATTTGAGAATATAGAGAATGCAATATGATAAACAATAAAACAAGACATTTCAACCATTAGCTCACTAAGTTAACGTGAATAAAGATTAAAGGGGTAGTTCAGTCAAAAATGAAAATTCTGTCATCATTTACTCACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU537977 lncRNA downstream 44149 10306459 ~ 10307849 (-) True G468711
TU537976 lncRNA downstream 49265 10292050 ~ 10302733 (-) True G468710
TU537968 lncRNA downstream 83460 10257268 ~ 10268538 (-) True G468705
TU537952 lncRNA downstream 95150 10255779 ~ 10256848 (-) True G468699
TU537960 lncRNA downstream 158019 10023665 ~ 10193979 (-) False G468702
TU538103 lncRNA upstream 1068 10353364 ~ 10356035 (-) True G468829
TU537987 lncRNA upstream 33747 10386043 ~ 10388152 (-) True G468718
TU538138 lncRNA upstream 62839 10415135 ~ 10437849 (-) True G468861
TU538156 lncRNA upstream 82972 10435268 ~ 10469485 (-) False G468876
TU538158 lncRNA upstream 85728 10438024 ~ 10469485 (-) True G468876
CI01000325_10330659_10345549.mRNA mRNA downstream 6449 10330659 ~ 10345549 (-) True CI01000325_10330659_10345549
CI01000325_10259809_10261986.mRNA mRNA downstream 90012 10259473 ~ 10261986 (-) True CI01000325_10259809_10261986
CI01000325_10223671_10247196.mRNA mRNA downstream 104466 10222845 ~ 10247532 (-) True CI01000325_10223671_10247196
CI01000325_10200118_10220665.mRNA mRNA downstream 130747 10199979 ~ 10221251 (-) True CI01000325_10200118_10220665
CI01000325_10092490_10094515.mRNA mRNA downstream 257483 10092414 ~ 10094515 (-) True CI01000325_10092490_10094515
CI01000325_10486953_10491074.mRNA mRNA upstream 133980 10486276 ~ 10491074 (-) True CI01000325_10486953_10491074
TU538097 other downstream 35313 10316130 ~ 10316685 (-) True G468823
TU537962 other downstream 159656 10167099 ~ 10192342 (-) True G468702
TU537690 other downstream 1064674 9287209 ~ 9287324 (-) True G468455
TU536859 other downstream 1654415 8679172 ~ 8697583 (-) True G467741
TU536851 other downstream 1780520 8564630 ~ 8568433 (-) True G467737

Expression Profile