RNA id: TU538103


Basic Information

Item Value
RNA id TU538103
length 2135
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G468829
representative True

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 10353364 ~ 10356035 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGGGCGGGACATTGATATCGCGGCTCCACTTCGTGCTCATTACCGCGCAGACTCCAAGGGGCTCCAAGTTCACTATGCGCAGACTCGAGACTCAAGATGTCAGCGCCATAATGGCACACTGGTGGCTTCAGTTACTACAATGGAAGAGAGTGAAGGTGCTTCGTCCATCTTTTTTTTTTTTTTTTTTTTTTAAAAGTCTATGGTCATGACATGCTGCTTGGCTAAAGCTATAGGACTTCCAGGATCCAATCACATCGCGATCATGATGCAGTGTTTTCCAACGTCATTTGGAAGTTCAACCAATGGAAACTGGATCTCGGGTGTGGTGGGTGGGATGATGTGTAGTAGAGACCAATCGGACACTATTTTACAGATGAAGCACACTTGGATTGGTTTGATCGCTCAGATTTACAGGTCTTAATTTACCATGTGCCATAGAATAGGAGCACACAGCTGAAACAGCGCTGGCAGATAATCACTCATCAGCCAGGATCTTATTACTTGTTTATTCTATGTACATCAAAGTTTTCAGTCACGTGACCGTCACGGAGCCCTGGAGGGCAAAACAGCCATGTAACTGCAGCACAAACCTGCAATTTTCCATCTTAAAAACAAAAATATGTGAACAAGGTGCAAGTTTTGGGCACTGGTGATCCATATACAGCACCTGCAGTGATTTCAATCACTAAAAACAGCGGGACGATTTTTTAAAAAGCTAACATAAAAAACACTAGGGTGGGTTGTACCAATAAAGATTAAATTAAAGGGTTAGTTCACTAATCAAGGATTTGCTGATCTGGGTTTTGTTTTAAATCGAGTTGTGTTGCACCACTTAATTTTAAACACAGATTAACTATGCAGAAAGACCGTTAGAATTGTTTTCCCCGCCAGGGGGGGCGTTCCCCTCAGGGCGTGACATCACGTGAAAACTATCAATTGTGGCGTTTACACAAGTAAGTAGTTCTTATGATCAGTAAAATCACTTGTTTGGAGGGTTTTTTGGACTCTTGGTTAATTATGTTACGAAATAAAACGGCTAGCCTACCTAATCCATTGCATGGCTTGAAGACATTAATACAGTTTGTGTGTCTGCTGCACGTGTTTTGCGCATGAGCCGCATGCATCTCAAAACTATGCACTCGAATGATGACCTTGCTTAATCGACCATCGATAAGTTTTATCAACGATTAATCCTTGGCATTCCTACTTCAGGTGCTTCTGTGCTTTTCTAACCACAATGAAAACTTTGTCAGGATGTGAGACTGGTCAAACTACCCTGAAATAAAATCCCTGTCATTTCAAAGATATCATGCAAAGGCATAGCCAGAGGCTTAACCAGCGTGCAGAGCACTGCAGCTGTCGCCATCCGTCTGGCAGCAGGCAGCATTTTCACAATTGATCTGGGAAAACAATAAATCTAGAAACCCTCTGGCTGTCCAGAGAAGAACAAAAATTAAAGCATTAAAGAAACTGGAAGTATCCCAACAATTTGGCAACTTGTCAAATTCACTTCAAACTACGGGGGTGTCCTAACTGGCACTCAATCTGTCCCTGTACAGGATCCAATGGGTGGGATTTTAGCTTCCCAGCTCTCCTGAGTGTCAGTAAAGAAACAGCTGCCATCTCTTGTGTTGACAATAACAACCTGGAGCTTCTCTTCCCCAGCTTAGCACTTTGAAAGAAGCTTTATCTTGAGAAATGCAATTTTATAGGCCAGGGCTACATATTAGGGAAAATCACATTTACTGCATGGCTGGAATGCTAGTATTTTGGAAATTTTGGAAAATAGTCACAATCTTCAACAACAGAAGGAAATGAAAACTATGCAAAAAATGTTTACAAAGTAAAATGATCTTCCATTAGCACTCTTCGTTCAAACTGACCCGAGGCACACTGGTATTACTGGTCATTTTTCAGTAAACTGTACTGGGGATAAATCTTCAAACTATGTCAGCAATCTACATCCTTAACAAAATACACATGAATTAGTCATTACTGTGAGATATAATGGTTTTCAAATCCTACTTTCCATTAAAAATCGTATACAAACGTGCTTCTGAATAACCAGCAAGCAGATCAACCGTTTGCCGTTAAACCGTTGCTCGCACGAGACACGACAAATGACATCTCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU538102 lncRNA downstream 1068 10351998 ~ 10352296 (-) True G468828
TU537977 lncRNA downstream 45515 10306459 ~ 10307849 (-) True G468711
TU537976 lncRNA downstream 50631 10292050 ~ 10302733 (-) True G468710
TU537968 lncRNA downstream 84826 10257268 ~ 10268538 (-) True G468705
TU537952 lncRNA downstream 96516 10255779 ~ 10256848 (-) True G468699
TU537987 lncRNA upstream 30008 10386043 ~ 10388152 (-) True G468718
TU538138 lncRNA upstream 59100 10415135 ~ 10437849 (-) True G468861
TU538156 lncRNA upstream 79233 10435268 ~ 10469485 (-) False G468876
TU538158 lncRNA upstream 81989 10438024 ~ 10469485 (-) True G468876
TU538168 lncRNA upstream 104551 10460586 ~ 10463677 (-) True G468885
CI01000325_10330659_10345549.mRNA mRNA downstream 7815 10330659 ~ 10345549 (-) True CI01000325_10330659_10345549
CI01000325_10259809_10261986.mRNA mRNA downstream 91378 10259473 ~ 10261986 (-) True CI01000325_10259809_10261986
CI01000325_10223671_10247196.mRNA mRNA downstream 105832 10222845 ~ 10247532 (-) True CI01000325_10223671_10247196
CI01000325_10200118_10220665.mRNA mRNA downstream 132113 10199979 ~ 10221251 (-) True CI01000325_10200118_10220665
CI01000325_10092490_10094515.mRNA mRNA downstream 258849 10092414 ~ 10094515 (-) True CI01000325_10092490_10094515
CI01000325_10486953_10491074.mRNA mRNA upstream 130241 10486276 ~ 10491074 (-) True CI01000325_10486953_10491074
TU538097 other downstream 36679 10316130 ~ 10316685 (-) True G468823
TU537962 other downstream 161022 10167099 ~ 10192342 (-) True G468702
TU537690 other downstream 1066040 9287209 ~ 9287324 (-) True G468455
TU536859 other downstream 1655781 8679172 ~ 8697583 (-) True G467741
TU536851 other downstream 1781886 8564630 ~ 8568433 (-) True G467737

Expression Profile