RNA id: TU538194


Basic Information

Item Value
RNA id TU538194
length 2823
lncRNA type antisense_over
GC content 0.40
exon number 11
gene id G468905
representative True

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 10502269 ~ 10506615 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACTGTATTAAAATGACATTTGGCAAAAGAGTTTAACTTGAGACTTTATTGGGAATGTTTAAAAGGTAAGAGTACAGAGTGAGTTATCAAACACATTTTTGTAGCACAGAATTACTATCATAATTCCATTTTTAAAGTGTTTTAGATGACGTTGTCCACAATGCACACAGCTTTCACTCTTCAGACTTTAAAGACTGACACAGACTTAGCTGCCTCAATTCTTTGGTGCAACCGGAACTTCACTGTTTATCAGGCTTGTTAAGTCCTCAAAGTCAACAAAGATGATGAGGTCATCATTTTTCAGGTAATTGCGCCTGCGCAAGTCGTAGTGTTTTATGAAAGTCCTCCATCCCTTTGACTCTCCTCGATAACACTGGCAGCTTGGGTCAAAGGTCCCAACCTTTCTTGGATTGTCCCATATTAGTTGGTTTTCATTGATGTGGTCATATCAGTGGTGAGGCTACGAGCAGAGGACATCCTCAGCTTAATGTCTGGATCCTGGTCCATCACCACTATGGTGGCCTGGCGGTTCACAGCAGGCCACTGCATCACAATGTCATTGTCACCACTGGCCAGATGGAAATACAGACCAGTGTAGTTGCCTGTGTAATCGGAGTAGCCAGACAGTGGCCGTACTTGAACACCATAACCGTAACCCTCAGGACTGTAGAAACGAGGGCTGGTCAGCACGGTGTTGTAGTCGGCTGTTTCCAGGATGCTCGAGAAGTTCTGGATGCGCCAGACAGCGGCTGGGCAGTGGGTCTCTGTCAGGCTGATATCATCGATGAATATGCCTCCTCCAGAGTTGGCAGGGTCTCCTTTCATCGCCTGGAAGGCATAGCGGAATTTTGCCCCTATCTGCATTGACACATGCGCAATCTTCCATGTTTTGTCTTCGTCAGCTGGGTAAGAAAAGCCTTTTGTTATCACCATATTAATTTTATGATAAAGGATTATGTAAAGGGATAATAACAAATGATTACATACATTATTATGATTATTATACAGTTACTCATTGAATATATGTGGACCTGAAATGTTGATTTAAAATTATTTTATCAATCTTACATGTATAATATCTTAAAGCTTCCCTGCAGTTTACACTTACTTTTGCAGCAATGCCATAGAAGAACATTCGGTGAACAATTCTTAAAAGAAGCATTTTTTCTTAGTGTGAAGAACATTTAAAAAATCTAAAGAACCTTTTGTGGAATGGAAAGGTTTTAAGAGTTTAACCTACTAGTAGTTCAAAAAGGAAAACAATTACCCCAAATTGTATGCAGTTTCTTTAATTTTCGCACGGTTCCTGTTCCATCATCCATCTTGGCCCAAATTACTAGCCTGTCCTTTACACTCCCTGTCATTTTGTAGAAAAACTGGAGGCATTGCAGCTTCCTCTTAGGATATAGGATGCGGGATTCAAGGAGAGCGGATTGTTCTGCACTTCCAGTGGAGGTGTCAATGTGCATAGAATATCCTAAATCTAAAAATCACAAGGCAAAAAAATATATATATATTTTTTTTTAATTGGCCAAAATGCAGCCACAATGAAAATATATCTATTTCAGGCAATGGAGATTTGTAACCTCTGCATTGTCCACTGAGAGTATGATCCTCAGAGCCAGGAGAGCTCTTAAGATGGACCCAATCAGCATCGTCAGTCAAACTCTGTACCATCCCACAAATGTTTATGTTTTCAAAAGCACACTGGTCCAGCAGGGTAAGAGAAGAGGAGCAGTTGTACATTCGATTCAGTCTGACAACATCCATCTCACTAAAGTCCAGGTACTGCCCTATGATGTTGAAGAACTCTGGGATGTTGGTCGTGATGGTAGGAATACTGGGGTCTTTGTTGAAAGCGAATGGACGATAATGCATAACAGATTCGTAGTCATATGGTGTATTTAGATCTGTGACAAAACTGTCATCATATTTGTTGAAGTTATGCTCCATGCTCAGTGACCTGATCTAGCCAGATCTTCACATAGTCATCTCGATCCTGGCGAGACTGCGTATGGTAAAACCCCAGGGCATGCAGCAGTTCATGCTCAATCACAGCCTTGTGGTCACAGCCTTGCCCCAGAGAAAGCAACTGTCCGTTCTGTAGATCTCCAACATAAGACCAGCACCTACCACAATTACAAGTCCTGTTAGTGTGATTTCCTTTGTTTTATAATATACGATAAGTGTTGTCTGGTGGCTGACTCTCATTTATAGGCTAAACACTATCATTAGAATGCTACAATGGTTTGTTATTTTGTTTAGTTAGCAAAGCTTATTATTATACACACCTTATCAGATCCAGATTAGCTAATTTTGTGGCAAAATTCTGTGTGGATAAATATGCTGATGTTATAACAAATATTTATTTGCAATGTTGCAATGCACACATACCCATCTCTTTTCTCAAATTTGATGTATGTCTTCTCTCCTTCATAGGGTTTGAAATCAACACATGATTTTAGACGGTACATTTCAAATGCCTGATGGATAGCACCTTTTGCATTAAGGTCCAGGCTGTCAGATAGAATGTATGGAATAGGGAACTTCCACCTGAATGCTGTGTCAATAAGACCAACCCGACCAGGAGGTAGGGCTATGTCTCCCTCAATCAGCCTGGTTTTTGCTCCAAGATTGATGAAAGGGTTGACATTTGGTTCATCTTCAACCTCATGAATACGAGTTGAAACTGGAATAGCATGAAGTGCTGCAGCCAGCACTGTAAAGATGAACAGCCTCGGTAAAAGCATTCTGACAGTATGTGAGGTACAAGATATTACCATAGTTATATAAAGAGAACTTTAACCTTTGACCATGTTTATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU538126 lncRNA downstream 28367 10472733 ~ 10473902 (-) True G468850
TU538156 lncRNA downstream 32784 10435268 ~ 10469485 (-) False G468876
TU538158 lncRNA downstream 32784 10438024 ~ 10469485 (-) True G468876
TU538168 lncRNA downstream 38592 10460586 ~ 10463677 (-) True G468885
TU538138 lncRNA downstream 64420 10415135 ~ 10437849 (-) True G468861
CI01000325_10486953_10491074.mRNA mRNA downstream 11195 10486276 ~ 10491074 (-) True CI01000325_10486953_10491074
CI01000325_10330659_10345549.mRNA mRNA downstream 156720 10330659 ~ 10345549 (-) True CI01000325_10330659_10345549
CI01000325_10259809_10261986.mRNA mRNA downstream 240283 10259473 ~ 10261986 (-) True CI01000325_10259809_10261986
CI01000325_10223671_10247196.mRNA mRNA downstream 254737 10222845 ~ 10247532 (-) True CI01000325_10223671_10247196
CI01000325_10200118_10220665.mRNA mRNA downstream 281018 10199979 ~ 10221251 (-) True CI01000325_10200118_10220665
TU538097 other downstream 185584 10316130 ~ 10316685 (-) True G468823
TU537962 other downstream 309927 10167099 ~ 10192342 (-) True G468702
TU537690 other downstream 1214945 9287209 ~ 9287324 (-) True G468455
TU536859 other downstream 1804686 8679172 ~ 8697583 (-) True G467741
TU536851 other downstream 1930791 8564630 ~ 8568433 (-) True G467737

Expression Profile