RNA id: TCONS_00020233


Basic Information

Item Value
RNA id TCONS_00020233
length 1544
RNA type mRNA
GC content 0.53
exon number 8
gene id XLOC_010224
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 45739193 ~ 45782607 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGAATGATTCTCGGGACTGTCCGCTAACTTTAGGATCTGGTTCGGCCATGGACCAGTAGCTATTCGCGCTTCTTTTTTCCATCAACCGTAACTCTTCGGATCCCAAACTGGCGACCTCACATCTCCAGCTGGCACGCGCAAATGAGCTCATAGATCAGATCAAGctcaaagTGTTTCCTGCGTGGCGGGGGGCTGGAGAGGGCCATGGTTGGGGCTGGGCTCAGTGTGTGAGGTGGGAGGCTGGAGAAGGAGGCCCGTCCCGGGGTCTGGAGTGTCCGCTTTGGTGCGTCCTGTGTCGAGGAGGAAGAGACAGACTTAAGCAGGCCTGCCAGATTGGGAGGGGAGCCCTTCGCCTGCCCACAGACATGCTGAGCCTCAGACTACCACAGCTATTCGACATCCACCAGGTGCCAAAGGTGTTTCGAGAGGATGGCATCATGTCTGGGTATCGTCATCCCAGGAGCTCAGCGCTGGACTGCATCCTCAGCAGTTTTCAAATGACCAACGAGACGGTCAATATCTGGACACACTTCCTGCCGACCTGGTATTTTCTGTGGCGGTTCAGCGTCCTGTGCTCATCTCTGGACTTTGTGACGGATAGCTACACCTGGCCGCTGCTGGTCTACATGCTGCTGATCTGCCTTTATCCCTTCACCTCCAGCTGCGCTCACACCTTCAGCACCATGTCAGCCGAAGCTCGTCACATCTGCTACTTCTTCGACTACGGAGCGCTCAGTCTCTACAGTCTTGGCTGTGCCATCTCATACGGGTCCTACGCTATGCCCGACAGCTGGGTCAACAGTTGGCTTCACCAGCATTTCGTGACCATCGGCATCTGCAACTCTCTCTTCTGCACCAGCATGTCCTGCTACACCAGGTTCATAGAGCTGCAATTTCCACACAAAAGTAAAATCCTGCGAACGTCTGCATTTGTAGTCCCCTTCCTCTTCGACAGCTTCCCACTTTTTTACAGACTGCTGTCGTGCTGTTGGGGGAGCTGTAGTCCCAGTGAAGCTCTGGCCAGTCATTCCTACCATCTGCTCTTTGCCTTTCTCACATGTTTTCTGTTCGCATCGCACCTCCCTGAGAGACTCGCTCCAGGCCGCTTCGACTACATCGGTCACAGTCACCAGCTCTTTCACATCTGTGCGGTCGTGGGCACTCATTTCCAGATGGAGGCCGCGTTATCAGACATGGCGTCCCGCAAAGACTGGCTCATATCCTACTCCGGACTGCCCACATTTCAGGGCACCATGGGGGCTCTCGCTCTGGGCGTCCTGTTAAACCTGGCCATCATTGGTGTGTTTAGCGCCAGTTTAATTCAGACTCCTCGCCAAAGCACTTCACACCCTCATCAGGAGTAACAAGCTTTCTTGAACACTCCGAACCTCACTGTGCACCTTTCCGGACGATTTTGACTTACAGAGCACTTATACAGTCACTTTCACTGATTTACAGTATATAGGCCTCTAGCATTAATACTTTTGTACTAAAAACGGTTATGCTAGATCATTTAatctagttttattttattttttactca

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090714-1 Predicted to enable signaling receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in ovarian follicle stage IV. Orthologous to human PAQR6 (progestin and adipoQ receptor family member 6).

Ensembl:

ensembl_id ENSDART00000154704

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022026 lncRNA upstream 257571 45455980 ~ 45481848 (+) False XLOC_010220
TCONS_00022025 lncRNA upstream 257571 45455980 ~ 45481848 (+) False XLOC_010220
TCONS_00020221 lncRNA upstream 465700 45217307 ~ 45273719 (+) True XLOC_010217
TCONS_00020220 lncRNA upstream 533183 45203090 ~ 45206236 (+) True XLOC_010216
TCONS_00020211 lncRNA upstream 1920854 43765979 ~ 43818565 (+) True XLOC_010209
TCONS_00022027 lncRNA downstream 4483 45787042 ~ 45812324 (+) False XLOC_010225
TCONS_00022028 lncRNA downstream 14603 45797162 ~ 45812324 (+) True XLOC_010225
TCONS_00022029 lncRNA downstream 205872 45988431 ~ 45990842 (+) True XLOC_010228
TCONS_00022030 lncRNA downstream 302831 46085390 ~ 46104010 (+) True XLOC_010229
TCONS_00022031 lncRNA downstream 487165 46269724 ~ 46270888 (+) True XLOC_010232
TCONS_00020230 mRNA upstream 5206 45693413 ~ 45734213 (+) True XLOC_010223
TCONS_00020227 mRNA upstream 48199 45571956 ~ 45691220 (+) True XLOC_010220
TCONS_00020226 mRNA upstream 50336 45456066 ~ 45689083 (+) False XLOC_010220
TCONS_00020225 mRNA upstream 295614 45425181 ~ 45443805 (+) True XLOC_010219
TCONS_00020224 mRNA upstream 298776 45424907 ~ 45440643 (+) False XLOC_010219
TCONS_00020235 mRNA downstream 139616 45922175 ~ 45930077 (+) True XLOC_010226
TCONS_00020236 mRNA downstream 148403 45930962 ~ 45980841 (+) False XLOC_010227
TCONS_00020237 mRNA downstream 148482 45931041 ~ 45982657 (+) True XLOC_010227
TCONS_00020238 mRNA downstream 218397 46000956 ~ 46091600 (+) False XLOC_010229
TCONS_00020239 mRNA downstream 218422 46000981 ~ 46082219 (+) False XLOC_010229
TCONS_00020229 other upstream 72567 45666735 ~ 45666852 (+) True XLOC_010222
TCONS_00020228 other upstream 151089 45588214 ~ 45588330 (+) True XLOC_010221
TCONS_00020217 other upstream 1034265 44704372 ~ 44705154 (+) True XLOC_010213
TCONS_00020216 other upstream 1051484 44683065 ~ 44687935 (+) True XLOC_010212
TCONS_00020214 other upstream 1133979 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020265 other downstream 1229782 47012341 ~ 47012457 (+) True XLOC_010251
TCONS_00020272 other downstream 2240734 48023293 ~ 48023408 (+) True XLOC_010259
TCONS_00020273 other downstream 2375750 48158309 ~ 48158423 (+) True XLOC_010260
TCONS_00020274 other downstream 2474454 48257013 ~ 48257130 (+) True XLOC_010261
TCONS_00020297 other downstream 3765212 49547771 ~ 49547886 (+) True XLOC_010272

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00012508 True 1143 mRNA 0.62 8 CM030138.1 20147777 ~ 20157212 (-)