RNA id: TCONS_00001599


Basic Information

Item Value
RNA id TCONS_00001599
length 2918
RNA type mRNA
GC content 0.40
exon number 15
gene id XLOC_001005
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8673061 ~ 8691969 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCATTTCACCAGGATATTCCtcacttttcctctcctcttcaGCTCCATGGAGGTGTGTGAGATAAAAATGCTGCCTGCTTTGGAGAGTGATGGCGCAACAGTGCATGTAAAAGTGCCAGGACCAATTCTGACATACCAGAATATTCACTACTGTATTAGAGAAAGCCGTGGGCTGTGCTGCAAGAAAGCACCTGAGAGAGACATCCTGAAAAATGTCAGTGGAATCATGAAAACAGGACTGAATGCAATCATGGGAGCAACTGGAAGCGGCAAAACATCGCTGTTAGACGTGATGGCTGGTCGCAAGGATCCTCGTGGTTTGCGCTCAGGTCAAGTTCTGGTTGACAACAAGCTTGTGACCTCTGACCTCCGACTCATGTCTGCTTATGTAGTACAGGATGATGTCCTGATGGGCACTCTGACTGTGCGGGAGAATCTTTTATTCTCTGGAAATCTGCGCTTACCAAGGGAACAGTTTTCCAGTgctgataagaaaaaaaaagtggagaGCATCATCGAGGAGCTTGGACTGGAGGACTGTGCAGACACCAAGATTGGTACTGAGTTTATAAGAGGTGTGTCAGGAGGAGAACGAAAGCGCTGTAGTATAGGAATGGAGCTCATCACGTCTCCTACGCTTCTGTTTCTGGATGAGCCGACCACAGGCCTGGACTCCAACACTGCCAACAGCATCATTGCTCTCCTGCACAGGTTGTCAAGAGGTGGTAGAACGATAATTTTCTCAATCCACCAGCCACGTTATTCAATCTTCAGGCTCTTTGATTACCTGACGCTGATGCATAAAGGAGAAACCGTTTATGCTGGCCCTGCTGGAAAAGCCATCGACTACTTCCAGAGTCTGGGTTATGAGCGTGATGCTTTCAACAACCCTGCAGATTTCTTTCTGGACATAACCAATGGAGAGACGGCTACTTCAATGCCAACAGAGAAGTCATTGGCTGAGCTTTACAGAGAGTCTCAGTTCTGCACCGCCGTGGACGAGGAGCTGAAGTGCATCACTGGACCATCAGATTCTTTATCTGAAGCCAAGAGCAAAGCACCATCCTATGTCACGTCCTTTAGCTATCAGttaAAGGTGGTATGTTGGAGGACAGGGCTGAATGTTGTCAGGAATCCTCAGACGTCATATGCTCAGATTGCAATGAACATCCTCTTTGCTCTGCTGATTGGACTTGTCTACTATCAGATGCCTTTAACTCTTCCCGAAGCCCTACAGAACAGGATTGGCGCTTTCTTCTTTCTCATCATCAACATGGTTTTTGGCAACTTGTCAGCAGTAGAGCTCTTCATTAATGAGCGAGCAATTTTTGTGCATGAAAACTCTGGAGGATATTACCGTACATCTGTGTATTTCCTCTCCAAGGTGTTCGTGGATCTGTTACCAAATCGCATTGTCCCGATTTTAATCTTCTCCAGCATTTCCTACTACATGATGGGGTTGAATCCAGCATTCACATCCTTCCTGTGCTTCGCGTTGACCATGTCTCTGGTCAGTCTAGCAGGAGTGAGTTTGGCCTTTCTGGTCAGTGCCAGCGTGAGCACTTTCGCCATGGCCAACATCCTCGTCGTCTTGCCTTTCGTCTTCATGATGgtGTTCGGAGGGTTTCTGGTGAATCTGAACTCCATGCTCAACTGGTTGTCCTGGCTCAAGTGGATCAGTATCTTCAAATATGGACTTGATGCTGTGACTataaatgaaatgaaagggcTGGTCCTCTATAGTGGCAATGCTACACTGCCAGGAGAGCTGTATCTAGAGTCTCAGGGCATCGACTACAGTGTGTGGGGTTTCTGGCAGAATGAGGTGGCCCTTCTGGGAATTGTACTGGTGTGTATGACATTTGCATACATACAGTTACGCAGGATCAACCGCTGGAAATGACGAACAAACCATCCATAACCGTTTCCCCCCATACACTGAAATTTCATCAAAGGTTTATTTTTGTAAACCAGCTCTGTTGTATCTCTGATTCACTGTTTGCAGATTCTAATACTTGAATTTAATAGCTACTCTTGACTTATTTTGTAAACTAGAAttactaaaaaaattatatatattttttatttaaaagttattttattaagttatttaatgtttaataccGAACTGAAGTAGTGAAAGAATGAttagttaattattaaataactattttattatttttctgccaaaaacACTATTTTTTTCACACAATTGCACAAAATTTCACAGTTACTGAGATATAgtgtgatgtaaaaaaaataaatgttcttaATTCTCCATGGGGAATGTATGATGCACTGCAAAAAGATGCATGGTGATGAAATTGGGTCTAGCTTAATTACAatttgaatctatctatctatctatctatctatctacctatctacctatctatctatctatctatctatctatctatctatctatctatctatctacctatctacctatctatctatctatctatctatctatctatctatataatgatcaatatgtttgttttttactacAATGTGTTGCCTATTAGTGAGTAAATTAACCCATTGAGGTCTATTTTGAGTCAAAGAAGATatgtaaaagctttttaaaatgtatagcccttaataaagaaacaaattatgCAAATGCTATATAACACCTCCAAATGCACAATATGTTTGAGACttaacctttaaaaaaagttCATATTTCTTATTGCTTATGCTTATGCTTATTTCACTCGAGgtgtcaaaaaataataatgtaaataatgtgtaGCCCTTTCCCCATATCTCACATATCTGAAAATGAAATTCGTAAGGATGCATATGACTGCATGTATTGCTAGTATTGACCATTCATTGGACATTTTTGTTATCTGGAAGTgaaagtttatgtataaacttagtaaataaatgtattttatttaaaaa

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050517-36 Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in intestine.

Ensembl:

ensembl_id ENSDART00000152153

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001597 lncRNA downstream 20413 8650109 ~ 8652648 (-) False XLOC_001004
TCONS_00001590 lncRNA downstream 47795 8615853 ~ 8625266 (-) False XLOC_001002
TCONS_00002917 lncRNA downstream 48119 8612575 ~ 8624942 (-) False XLOC_001002
TCONS_00003335 lncRNA downstream 48179 8622702 ~ 8624882 (-) True XLOC_001002
TCONS_00001589 lncRNA downstream 54417 8615535 ~ 8618644 (-) False XLOC_001002
TCONS_00003336 lncRNA upstream 282531 8974500 ~ 8977960 (-) False XLOC_001008
TCONS_00001604 lncRNA upstream 282531 8974500 ~ 8977963 (-) True XLOC_001008
TCONS_00003337 lncRNA upstream 286936 8978905 ~ 8980671 (-) False XLOC_001009
TCONS_00003338 lncRNA upstream 389873 9081842 ~ 9082772 (-) True XLOC_001010
TCONS_00003339 lncRNA upstream 446669 9138638 ~ 9139160 (-) True XLOC_001015
TCONS_00001598 mRNA downstream 19676 8650713 ~ 8653385 (-) True XLOC_001004
TCONS_00001592 mRNA downstream 20329 8649099 ~ 8652732 (-) False XLOC_001004
TCONS_00001594 mRNA downstream 20406 8650096 ~ 8652655 (-) False XLOC_001004
TCONS_00001596 mRNA downstream 20413 8650196 ~ 8652648 (-) False XLOC_001004
TCONS_00001593 mRNA downstream 21343 8649904 ~ 8651718 (-) False XLOC_001004
TCONS_00001600 mRNA upstream 71460 8763429 ~ 8928841 (-) False XLOC_001006
TCONS_00001601 mRNA upstream 73655 8765624 ~ 8917902 (-) True XLOC_001006
TCONS_00001602 mRNA upstream 270655 8962624 ~ 8966046 (-) False XLOC_001007
TCONS_00001603 mRNA upstream 270884 8962853 ~ 8963484 (-) True XLOC_001007
TCONS_00001605 mRNA upstream 286939 8978908 ~ 8980665 (-) True XLOC_001009
TCONS_00001595 other downstream 20406 8650109 ~ 8652655 (-) False XLOC_001004
TCONS_00001587 other downstream 119763 8552750 ~ 8553298 (-) True XLOC_000999
TCONS_00001570 other downstream 697292 7970406 ~ 7975769 (-) True XLOC_000989
TCONS_00001564 other downstream 752855 7920119 ~ 7920206 (-) True XLOC_000985
TCONS_00001563 other downstream 753494 7919480 ~ 7919567 (-) True XLOC_000984
TCONS_00001610 other upstream 426131 9118100 ~ 9118671 (-) False XLOC_001012
TCONS_00001617 other upstream 505890 9197859 ~ 9197966 (-) True XLOC_001018
TCONS_00001629 other upstream 768041 9460010 ~ 9486080 (-) False XLOC_001025
TCONS_00001646 other upstream 1048833 9740802 ~ 9816875 (-) True XLOC_001029
TCONS_00001656 other upstream 1371532 10063501 ~ 10064568 (-) False XLOC_001036

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_00495650_00505028.mRNA True 2154 mRNA 0.44 15 CI01000300 495366 ~ 505028 (-)